BAC Information

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BAC

Clone NameMSMg01-059D13
Chromosome13 (Build37)
Map Location 67,064,596 - 67,065,038
singlet/doubletsinglet
Overlap genePtdss1
Upstream geneEG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1
Downstream geneZfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059D13.T7 (MSMg01no059_d13.b1)MSMg01-059D13.TJ (MSMg01no059_d13.g1)
ACCAG285951AG285952
length689692
length of high quality
(start - end)
600 (42 - 641)505 (76 - 580)
definitionCHROMAT_FILE: MSMg01no059_d13.b1 PHD_FILE: MSMg01no059_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:40 2005CHROMAT_FILE: MSMg01no059_d13.g1 PHD_FILE: MSMg01no059_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATAATTGCGGCGCTAAACGATCACTTTCAAAGAGGACCGCGGAATT
CTCTTGTCCCGCCTCCTCCAGTTCCTTAAAGGGCAAACTTACTTGGAACT
GTAGTCGCTGCAGCAGTAGCAACTTAAGCAGGGTTCACACTGAAACCAAG
CAAGACCTGACCCACTTATGGCTCATGTCCTTATAAATGCAGTCCATGGA
AACTCATACACACAGGGAGAAGGCCACCTGATGATAAATTTAGAGATCAG
GGTAATGCATCTTTAAGTCAAGGAATGCTAAAGATTGTATGAAGTGGGTA
AAGGCTCTTAAGATGTAGACCTGGGTTGGGTGTCCATAGCACTGTCAGAA
GGAAGCAACCCTGCTCAAGCTTGATTGCAGACTCTGGCCTCCCAAACTAG
GAACACACTGACAGAAGCTCACCTAACGGGAATGCTTTTGTATATGCAGG
GCAGTAATAGCTGGCACTGAGAAATATACTGACTGTGCACATGGTCAAAT
TCTGTGTCCTGGGAATGATCAATAAATGTTAAACTAATTGGAAGTAGTTC
TCCAACTTTCAGTTTGCTGATAGCTTCCCTGGGGGTGTACCTGTCATTTA
TTAACAGGCATTACCTTTTGATAACAGGTCACAGGGCTCTATTGGGAAGT
CTCCCATCAGAGAGAAAACAAACTATTGTAATCCACAAT
NACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGATCTGTGTATCCCTGTTGATT
GAATGCTGGGATAAAAAGCATGGAAAACCATGTCTGAACTTAAGCTTTTC
TTCACCTAAAATTCTGCACCAGGATGACTTGATCCAGATTATCTGCTTGA
CTCTTATCTCCTGGGATTAACAGCATGTACCACCATGCCTGAACCTAAGA
ATTTCCATCTAGATGTTAAATTGTAAACTCAGAACAGTAATCACACTCCA
TCCCTTGTTAATTTGAAAAATATTTATATCTCCTTATGTCCACATGAAAA
GAATAACCAGGTAACAATCATTCCTAATGTGATACAGTTCTCCTTCCTAA
AACTGCACATGCATAAGATTACCTGGATGGAATCTTGCCTTAACATCACC
TTGCTCTTAATGTCATATAATATTTTTTATCAAAAGATATAGGTTCATTA
AACATCCTAGCGAGTGTGTCTTTTTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCCCCCTCTTTCAC
TCCCCTCCCTTTCATTATTTTTTCTTTCCTTCCTTCCTTACCCTTCTTCC
TTTCTTTTCCACCTTCCCCCTTTTCCCCCATTTTCATCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_d13.b1 MSMg01no059_d13.b1 CHROMAT_FILE:
MSMg01no059_d13.b1 PHD_FILE: MSMg01no059_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:40 2005
         (600 letters)



>mm_chr13_67064039_67065038
          Length = 1000

 Score =  841 bits (435), Expect = 0.0
 Identities = 441/443 (99%)
 Strand = Plus / Minus

                                                                        
Query: 158  gaaactcatacacacagggagaaggccacctgatgataaatttagagatcagggtaatgc 217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gaaactcatacacacagggagaaggccacctgatgataaatttagagatcagggtaatgc 941

                                                                        
Query: 218  atctttaagtcaaggaatgctaaagattgtatgaagtgggtaaaggctcttaagatgtag 277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 940  atctttaagtcaaggaatgctaaagattgtatgaagtgggtaaaggctcttaagagggag 881

                                                                        
Query: 278  acctgggttgggtgtccatagcactgtcagaaggaagcaaccctgctcaagcttgattgc 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  acctgggttgggtgtccatagcactgtcagaaggaagcaaccctgctcaagcttgattgc 821

                                                                        
Query: 338  agactctggcctcccaaactaggaacacactgacagaagctcacctaacgggaatgcttt 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  agactctggcctcccaaactaggaacacactgacagaagctcacctaacgggaatgcttt 761

                                                                        
Query: 398  tgtatatgcagggcagtaatagctggcactgagaaatatactgactgtgcacatggtcaa 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  tgtatatgcagggcagtaatagctggcactgagaaatatactgactgtgcacatggtcaa 701

                                                                        
Query: 458  attctgtgtcctgggaatgatcaataaatgttaaactaattggaagtagttctccaactt 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  attctgtgtcctgggaatgatcaataaatgttaaactaattggaagtagttctccaactt 641

                                                                        
Query: 518  tcagtttgctgatagcttccctgggggtgtacctgtcatttattaacaggcattaccttt 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  tcagtttgctgatagcttccctgggggtgtacctgtcatttattaacaggcattaccttt 581

                                   
Query: 578  tgataacaggtcacagggctcta 600
            |||||||||||||||||||||||
Sbjct: 580  tgataacaggtcacagggctcta 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)