XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCA
GACTTCCCACAACGCCAAGAAGTCTCCAGGAACAAACTGGCCACTATGTG
TATCTTGCAGGGGAAACATCCCCTTATACCATGCAGAAGAGGCTTCTTAA
AAATCAAAACAAATCCCAAGAACTAAAACCCACCATTCTTATTCTTAACA
CCCTAGTTCTCCCTGAAACACAAGTATACTGCTTGCTTTTTTTCTGGTTT
CAGACAGTTTGAAGTTTGCCAACCACTGTATTGTTTTTCATCTGTTTGAT
GAAAGCAGAGGCAGTACCACCTTCAACAGACTGCCCTTTGGCTTGATCAG
AAGTTGGCAGTGTACTTTCAAGAACTCTACATAGGCTGGTACGTGTCATC
TGATACCTTGATCTGAAAGAACCATTAGTTCATCCGTATGCTTATGCTCA
GTCTGATGTCGCCAACTATAACATTTTCAGTTTTTCATTCTTGTAAGAAT
TCTAACATTTTCAAATTAGAAAGTGTCTCAGAACTGATACTTTTGATGTA
GCACTTTTTATCTAAAGTGTTGCACTTTAAAATTAATCATTTCTCTGAAT
GCAAAAATGCCTAATATGTAGCATCTCTTGCTATCATTTACATTTATACA
CTTGACTTGTGGGTGTCAAGTGTATCTCATGTAACTCCACCTGAATCTGC
ATCTTTTCTGAGAACTCAGTTTTTCC

CCCTCCCCTTATCGATGAAGTGTGTAGTXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCAGCTGTGGCT
ATCATGCTTGGGGGAAGGGCTTGTGATGCCCTATACCTCACTGAGGGTTT
CTGGTTCAAAAGAGAAGAACACAACAAAGTCAGAGGGGATTGCTGGAAAG
CAGGATTTCTATGAACAAGGGATGATGAGAAAACATGACAGAAAATGTTC
CAAACTCAGTACTGCATATATAAAATGTCAAACCATAAAAGGGACCAGTT
AGGTCACTTGCTAGGAAATCTATAGTAAAGTATATATAAATGTGGNTTAA
ACCTTGATTCTGCTAGCGTGTATCATGTCTCATTCCCCTCGCCACAATAG
ATATGAATACCAATTATAATACCAAGCGACGCCGCCATACAAGACACATC
TGACATCATGGTTCTCCCTCTTTCCTCACTCCCCCAAAAGTCTGCACTTT
TGTCCTTTACAGTCTCACTCCACTCTCACATTTCCAGCTGACCCACCTGC
ACATGCTTTTCACTGTGCCCATACTGCACATGCTCCTCTCACTAAAGCTC
CAATTCCCCTCCACCTCTTCTCCCTTTGCCCTGTTCCGCCCCGTTTTTCT
TTTCTTTTAACACACCCCCTCCTCCCCGCATTCTTAAAAGCCTGCAGCAA
CTTACGTCCATCCTCGTTCTCTTTCT

Query= MSMg01no060_d07.b1 MSMg01no060_d07.b1 CHROMAT_FILE:
MSMg01no060_d07.b1 PHD_FILE: MSMg01no060_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:53 2005
         (690 letters)



>mm_chr13_18500360_18501449
          Length = 1090

 Score = 1232 bits (637), Expect = 0.0
 Identities = 674/689 (97%), Gaps = 6/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccagacttccc---acaacgccaagaagtctccaggaacaaactggccactat 61
           ||||||||||||   | |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gaattcaccaga---cacaagacaacgccaagaagtctccaggaacaaactggccactat 852

                                                                       
Query: 62  gtgtatcttgcaggggaaacatccccttataccatgcagaagaggcttcttaaaaatcaa 121
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 851 gtgtatcttgcaggggaaacatccccttataccatgcagaagacgcttcttaaaaatcaa 792

                                                                       
Query: 122 aacaaatcccaagaactaaaacccaccattcttattcttaacaccctagttctccctgaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aacaaatcccaagaactaaaacccaccattcttattcttaacaccctagttctccctgaa 732

                                                                       
Query: 182 acacaagtatactgcttgctttttttctggtttcagacagtttgaagtttgccaaccact 241
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 731 acacaagtatactgcttgctttttttctggtgtcagacagtttgaagtttgccaaccact 672

                                                                       
Query: 242 gtattgtttttcatctgtttgatgaaagcagaggcagtaccaccttcaacagactgccct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtattgtttttcatctgtttgatgaaagcagaggcagtaccaccttcaacagactgccct 612

                                                                       
Query: 302 ttggcttgatcagaagttggcagtgtactttcaagaactctacataggctggtacgtgtc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttggcttgatcagaagttggcagtgtactttcaagaactctacataggctggtacgtgtc 552

                                                                       
Query: 362 atctgataccttgatctgaaagaaccattagttcatccgtatgcttatgctcagtctgat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atctgataccttgatctgaaagaaccattagttcatccgtatgcttatgctcagtctgat 492

                                                                       
Query: 422 gtcgccaactataacattttcagtttttcattcttgtaagaattctaacattttcaaatt 481
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 491 gtcaccaactataacattttcagttttacattcttgtaagaattctaacattttcaaatt 432

                                                                       
Query: 482 agaaagtgtctcagaactgatacttttgatgtagcactttttatctaaagtgttgcactt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agaaagtgtctcagaactgatacttttgatgtagcactttttatctaaagtgttgcactt 372

                                                                       
Query: 542 taaaattaatcatttctctgaatgcaaaaatgcctaatatgtagcatctcttgctatcat 601
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 371 taaaattaatcatttctctgaatgcaaaaaagcctaatatgtagcatctcttgctatcat 312

                                                                       
Query: 602 ttacatttatacacttgacttgtgggtgtcaagtgtatctcatgtaactccacctgaatc 661
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 311 ttacatttatacacttgacttgtggttgtcaagtatatctcatgtaactccacctgaatc 252

                                        
Query: 662 tgcatcttttctgagaactcagtttttcc 690
           ||| |||||||||||||||||||||||||
Sbjct: 251 tgcttcttttctgagaactcagtttttcc 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)