BAC Information

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BAC

Clone NameMSMg01-060I18
Chromosome13 (Build37)
Map Location 22,334,131 - 22,485,064
singlet/doubletdoublet
Overlap geneOTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9
Downstream geneV1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I18.T7 (MSMg01no060_i18.b1)MSMg01-060I18.TJ (MSMg01no060_i18.g1)
ACCAG286965AG286966
length711744
length of high quality
(start - end)		457 (48 - 504)253 (76 - 328)
definitionCHROMAT_FILE: MSMg01no060_i18.b1 PHD_FILE: MSMg01no060_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:18 2005CHROMAT_FILE: MSMg01no060_i18.g1 PHD_FILE: MSMg01no060_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:18 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(22,484,612 - 22,485,064)(22,334,131 - 22,334,383)
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGTTTCCCAAGCCAAAATTTCTTCCTCTGTTTCTCATTCCT
TTTCATCATATTTCCCCACCCAATTCCCAAAGCCTGAGGTTCATGCTAAA
CCTGGCTGTCTTCCCCACATCACACAAAGACTCTGGGAAACAGCTAGTCA
ACAGCTGCAACATGTCTCTCATTTAGTAACTTTATCTTCCACATCTACCT
TCTTTTGTTCCATATTCCTTTCACATCTGCATTTTGATGTGTCAACAATT
TCTATAATGACATTTGAATTCAAAGGCTTATAACTTCAATTTCTACATCT
TAATATGTTATGGTTTTTATATTGACCATTATTTGATTTCACTCTGTATG
AATGTTTACTAGATACTTTTAAAAGGTAGTCCTTGGTGTGCATTCAAGTT
GTATAACTTTTCTGGCCAAAACCTCAGTTAGAGCTGAATCACCAGAAGAT
GTCCTGCAAAGCCTCTTGTGTGAAAAATTCATGTAAACATCGGGTTGCAG
CCAGCGACAGTGCCCTGTAGAAACCCGGGATGCTTCCTAGGAGAGTCGGC
AGGAAGTCATCTGATTCCCTTGGATGACTCACTGCATCTGTGGCCCCAGT
GAAATGATCCCCGAGCACCCTAAGGAACCTGGAACACCTCCTGTATATAT
ACTCCCTTGGT

ACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTACCAAATGTGTCACCCAAACT
AAATTGACTTTTCAGGTTATTCAGTTTTCAAACATCCTAAAGAAAACAAC
TGCCTCAAGTGTCTCTGTAAGTTAGTTGCCAGCTTAACTCTGTGCTTAGT
GTAAGGTTTTGAGAAGAAGAGCCTCATTTAATAACTTATTCATACACTAT
TTCTGAGTATGCATTAGCAGCAACTCACTAAGATACTGCAAACAAAAGCA
GTTTCTCTGACGCATGTTCACTATCCAGCGAGAAGGATAGCAAATACACA
GGCAACACAGACCGCAGTTCACAGAAAGCACCGGCATGGAACCTGATCTG
ATATGCGAAAGATGCACAGATATCACGTACCCATACAGTATGTTGATCGG
CCCAAGATCAACCAGGGCGTATGTGCATAGTCCTGTGTCCCCGGAAACAC
CGATGTTACATTCGAGCCCTATGTTGAGTTTCAACCTAACTTAGAAATAA
CTTTGACAACAAAAGGATGGTATTTATCAAACACTAACCCCGCCTCAATG
TAGACCTGTTTCCTAAATGTCTTTGTTACACCTTAACCCCCACCGCGCAT
ACCACCACTGTTTTTAAACACGATAGCGCTGCCCCCCTGATTTCAGGCAA
TGCCACACCCCGCCACCCACCCCACCTTTGTCCCCTTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i18.b1 MSMg01no060_i18.b1 CHROMAT_FILE:
MSMg01no060_i18.b1 PHD_FILE: MSMg01no060_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:18 2005
         (457 letters)



>mm_chr13_22484408_22485264
          Length = 857

 Score =  853 bits (441), Expect = 0.0
 Identities = 450/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagtttcccaagccaaaatttcttcctctgtttctcattccttttcatcatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaattccaagtttcccaagccaaaatttcttcctctgtttctcattccttttcatcatat 598

                                                                       
Query: 65  ttccccacccaattcccaaagcctgaggttcatgctaaacctggctgtcttccccacatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttccccacccaattcccaaagcctgaggttcatgctaaacctggctgtcttccccacatc 538

                                                                       
Query: 125 acacaaagactctgggaaacagctagtcaacagctgcaacatgtctctcatttagtaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acacaaagactctgggaaacagctagtcaacagctgcaacatgtctctcatttagtaact 478

                                                                       
Query: 185 ttatcttccacatctaccttcttttgttccatattcctttcacatctgcattttgatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttatcttccacatctaccttcttttgttccatattcctttcacatctgcattttgatgtg 418

                                                                       
Query: 245 tcaacaatttctataatgacatttgaattcaaaggcttataacttcaatttctacatctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcaacaatttctataatgacatttgaattcaaaggcttataacttcaatttctacatctt 358

                                                                       
Query: 305 aatatgttatggtttttatattgaccattatttgatttcactctgtatgaatgtttacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aatatgttatggtttttatattgaccattatttgatttcactctgtatgaatgtttacta 298

                                                                       
Query: 365 gatacttttaaaaggtagtccttggtgtgcattcaagttgtataacttttctggccaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 297 gatacttttaaaaggtagtccttggtgtgcattcaagttgtataacttttctgggtaaaa 238

                                            
Query: 425 cctcagttagagctgaatcaccagaagatgtcc 457
           ||||||||||||||||||||||||| |||||||
Sbjct: 237 cctcagttagagctgaatcaccagacgatgtcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no060_i18.g1 MSMg01no060_i18.g1 CHROMAT_FILE:
MSMg01no060_i18.g1 PHD_FILE: MSMg01no060_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:18 2005
         (253 letters)



>mm_chr13_22333931_22334583
          Length = 653

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaccaaatgtgtcacccaaactaaattgacttttcaggttattcagttttcaaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaccaaatgtgtcacccaaactaaattgacttttcaggttattcagttttcaaacat 260

                                                                       
Query: 61  cctaaagaaaacaactgcctcaagtgtctctgtaagttagttgccagcttaactctgtgc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cctaaagaaaacaactgcctcaagtgtctctgcaagttagttgccagcttaactctgtgc 320

                                                                       
Query: 121 ttagtgtaaggttttgagaagaagagcctcatttaataacttattcatacactatttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagtgtaaggttttgagaagaagagcctcatttaataacttattcatacactatttctg 380

                                                                       
Query: 181 agtatgcattagcagcaactcactaagatactgcaaacaaaagcagtttctctgacgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtatgcattagcagcaactcactaagatactgcaaacaaaagcagtttctctgacgcat 440

                        
Query: 241 gttcactatccag 253
           |||||||||||||
Sbjct: 441 gttcactatccag 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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