BAC Information

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BAC

Clone NameMSMg01-061B08
Chromosome13 (Build37)
Map Location 81,435,009 - 81,435,152
singlet/doubletsinglet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061B08.T7 (MSMg01no061_b08.b1)MSMg01-061B08.TJ (MSMg01no061_b08.g1)
ACCAG287376AG287377
length781748
length of high quality
(start - end)
144 (72 - 215)295 (70 - 364)
definitionCHROMAT_FILE: MSMg01no061_b08.b1 PHD_FILE: MSMg01no061_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:58 2005CHROMAT_FILE: MSMg01no061_b08.g1 PHD_FILE: MSMg01no061_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGACTACGCGGAAT
TCCATTGATATTTTCTAATATGTATTGTTTACTCTTTTGCTAAATATTAT
CAGTTGTTTACAATATGTGGTTACCACTAAGGAAGATGCATTAAGTATTC
TATATATCTATATTTTATAAATTACTTCTTTGGGGGTATACAACCAGACT
AACATAAATGTAGATGAGATGTGGTTTGTGTTTAATAGTTTGCATGTAAC
AGTAACCTACAATAAGCACTTAATGCTGGGGGTGATCTGTTTTAAGGGTG
AGGAGGCCAGTGGAACAGGTGTATATCGGAGGGGGTCGGACATGGGTATG
TTAATACTCACTTCCATTTACCCCCTTTTATGGCCAATATATAGTGTTAG
AATTCAAATCGAGGTCCTTCCCCATGCTAGACAACTAAGTGTTCTACCAT
GCTAGGGAAGGGGTCCAGTCAATTCGTTACTTCTTTTGCCTTTGGATTTT
AAGGTATGAGTGGAGGGGGTAAGTTCGGGAGGTGGTTGGAGCTTGCATTT
GGGGTTGATCTATTACGTGCATTTCCTCCAGAGAGCGTTACGGATTGCTG
GAATTATTGGCGGGCGTGGAAATCATGACTCAACCTGGGATCGGTAAATG
GTTATATCTGATATCGTTCAACCCGGTGTTCCCCTTAGGACGAATTATTG
ACCAACGTTACTATTTTTGTGTTCTAGGTAAAGTGCGAGCAGTGGTAGGG
TTAGTTGATTGAGGTAAGATACGTCACTGAA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGACTGGCTAATTAGTTTATTGCTGGTGG
CTATGTAAAATGATATAACCATCTGAAAGATGTTAGTTTCTTAAATAACT
ACACATGAATTATGCAGGTCCATGCAATTACTGTCTTGGCCATTTATTTC
AATGAAAACTTGTTACACAGAAATCTCTACATGAATGTTTGTGGTACCTT
ATTATAATAAAACTGTCCATCAGTTGGCAAAAGGCTAAATGAGCTGTGAA
CTCCTACTAAGTGTGGTAATGAACAAGCCATCGAGACACATCAGCCAGTG
TAATCTCCTAATGACCATGCCAAACAAAAAATCTCCAAAATTGTAGGGTG
AAAGATTCCATTCCCCCCTGACAGTCATAACACCATAAAAATGCATAACT
TATTCGCCATTTATAACAATGATGGACTGTCAGGCACCAAACCGAGTGAT
CATGAAAGTTACTGTAAAGGATTCTTACCAACCGTACATTGCTTGTGACC
TTGTCTGCCGTTACATCTTTTTGCCATTTGCCTACTTTCACGTATCTCTG
ATCCTTTTCATCTTCGACCCATTTTTCCGTCCTTGTATTTTCCCTCCTAT
CACTTCCATATATTTTCCCTACCTAATTTTCACATTTAACCTTTTCCACC
CCTTTTCACACTCCCTTACGCCTCACCCCTTTTCCCCTCTACTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_b08.b1 MSMg01no061_b08.b1 CHROMAT_FILE:
MSMg01no061_b08.b1 PHD_FILE: MSMg01no061_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:58 2005
         (144 letters)



>mm_chr13_81434809_81435352
          Length = 544

 Score =  232 bits (120), Expect = 6e-66
 Identities = 138/144 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtattgtttactcttttgctaaatattatcagttgtttacaatatgtggttaccactaag 60
           ||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gtattatttactcttctgctagatattatcagttgtttacaagatgtggttaccactaag 260

                                                                       
Query: 61  gaagatgcattaagtattctatatatctatattttataaattacttctttgggggtatac 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 261 gaagatgcattaagtattctatatatctatgttttataaattacttctttgggggtatat 320

                                   
Query: 121 aaccagactaacataaatgtagat 144
           ||||||||||||||||||||||||
Sbjct: 321 aaccagactaacataaatgtagat 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)