BAC Information

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BAC

Clone NameMSMg01-061F13
Chromosome13 (Build37)
Map Location 41,326,154 - 41,326,400
singlet/doubletsinglet
Overlap genenone
Upstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2
Downstream geneLOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061F13.T7 (MSMg01no061_f13.b1)MSMg01-061F13.TJ (MSMg01no061_f13.g1)
ACCAG287577AG287578
length735762
length of high quality
(start - end)
339 (43 - 381)248 (70 - 317)
definitionCHROMAT_FILE: MSMg01no061_f13.b1 PHD_FILE: MSMg01no061_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:17 2005CHROMAT_FILE: MSMg01no061_f13.g1 PHD_FILE: MSMg01no061_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGCGGA
ATTCTTTATATATTTTGCATATTAGCCCTCTGTCAAATGTCGTGTTAGTG
ACGATCTTTCCCCAATCAATAAGCTGCCATTTTGCCCTATTGACAGTGTC
CTTTGCCTTACAGAAGGTATGAGGTCTCCATTTATCAATTGTTGATCTTA
GAATCTGAGCCATTGGTGTTCTGTTCAGGAAATTGTCTCCTGTACCATGC
GTTCAGGGCTATTTCCCACTTTCTCTTCTATTACATTTAGTATATCCAGT
TTTATGCTGAAGTCCTTGATCCACATGGACTTGAGTTTTGTGCAGGGTGA
AAAATATGGATATATTTTGCATTCTTCTACATGCAGACATCCAGTGAGAC
CAGCACAATTTGCCGAAAATGCTTTCTTTTTTCTATTGTATGATTTTGGC
CTCTTTGTTAAAAATCACGCGTCCATATGTGCGCGGGTTTATTTCCAGGT
CTTCGATTCTATTCCATTAACCAACCTATCTATTTCTGCACTGATATCAT
GTAGCTTTTTTCCTCCTCATTACTGCTCTGCCGTACTACTTGAACTCCTG
CCACGCCGATTTTCCCCAAAGTTCCTTTACCGCTCAACGAATCCCCTCGA
CTACTCCCGCGCTTAATATTGCCCCCCTTCACCCCACTCATCTCATCCCC
CCTATTCTCCCCCTCCCTCCCTCCCCATCACTCCN
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTAAAATATCTAAAGCAGTAGAAGATATC
TTCCAGACAATTGCCCCTCGGTCTGGAGCCAACAGAGCTGAGTTCCCCTC
TAGTGACATGCCAGGGAGTTAAGAGATTGTGTTGGTTAATTTCCATTGTC
AGTTTGGCTGGACTTAGGGTCACTTAGGAGACCAGTGGGGCACATCTCTG
GTCATTTATAAGGTCGTTTCCTAAGAGGGCTAATTAAAAGAAGATTCACC
CTGAAGGGTACCATCCTTTGGGCCAGAGTCCTAGAGAGGAGGGAGAAGGA
GACAGATTGCAGAATGCAGGCATCCCCACTCTGTTTCCTGACCTCCATGC
TAATTCTTCAGATCACAGATCTGAACACTCTCTAGCCAAGAGCTATTATA
AAGCTCTTTGGCCAGTCATTTCCATCATAACTATGAGATTAAGGAACTAA
TGCAGACAGAAAAATTTTACAACAATATGGGATTATGTTTACTGTTTTCC
ATTTATTCCCGGTTATTCTATTTCTAGAAGTCTATCTTGACTATTATCAT
TAAGTAATTTTTCAATGCGCATTCGGTCCAACCAAATTTCTTGTATATAT
TTTTGTTTTTGGTTTTCCCCCGCCCAGTCTTCCAATATACTTATTTATCT
ATTGGAGCTTGAATTTACTGAACTTATACTAACTTATATTCTATTACCTT
TCTTACTCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_f13.g1 MSMg01no061_f13.g1 CHROMAT_FILE:
MSMg01no061_f13.g1 PHD_FILE: MSMg01no061_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:17 2005
         (248 letters)



>mm_chr13_41325954_41326601
          Length = 648

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaaaatatctaaagcagtagaagatatcttccagacaattgcccctcggtctggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaaaatatctaaagcagtagaagatatcttccagacaattgcccctcggtctggagc 260

                                                                       
Query: 61  caacagagctgagttcccctctagtgacatgccagggagttaagagattgtgttggttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagagctgagttcccctctagtgacatgccagggagttaagagattgtgttggttaa 320

                                                                       
Query: 121 tttccattgtcagtttggctggacttagggtcacttaggagaccagtggggcacatctct 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tttccattgtcagtttggctggacttagggtcacttaggagactagtggggcacatctct 380

                                                                       
Query: 181 ggtcatttataaggtcgtttcctaagagggctaattaaaagaagattcaccctgaagggt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ggtcatttataaggtcgtttcctaagagggctaactaaaagaagattcaccctgaagggt 440

                  
Query: 241 accatcc 247
           |||||||
Sbjct: 441 accatcc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)