BAC Information

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BAC

Clone NameMSMg01-061J13
Chromosome13 (Build37)
Map Location 24,130,400 - 24,130,687
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneV1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061J13.T7 (MSMg01no061_j13.b1)MSMg01-061J13.TJ (MSMg01no061_j13.g1)
ACCAG287769AG287770
length721783
length of high quality
(start - end)
399 (71 - 469)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no061_j13.b1 PHD_FILE: MSMg01no061_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:37 2005CHROMAT_FILE: MSMg01no061_j13.g1 PHD_FILE: MSMg01no061_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCTTCTACCTCTCCTGCTTCCCCCTCCTATCCCCTTCCTTAT
CTCCCATTCTTTGTTTCCTCATGGTCTTTCTGTGTATATCCCAAGATGAT
CTTAAACTTATAGTGGCTCTTCACTTTCAGCCTTAAGGGTGCTGAGATTA
CAGGTGTGTGCACTACCACGCTTGAGTCTTTTAAAATCTATTAATTTTAT
ATTTTATTTATGGCTGTGTTTGTGTGCACCCATGTATGAGCACATGTGTA
GATGCATGCCGTTGTGTACATGTTTAAGTCAGAGGACAATATTTAGGTGT
TGATTTCCTCCTTCCAATGTGTGGGTCCTGGGGAACAAACTCAAGCAATC
TCATTGGCCGGCCTTCCCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCCTTCCCCTTCCCCTTCCCCTTACCCTTCCTTCTCC
CCCCTCCCCTTCCCCATCCCCCTCTCCCTTTGGTTTCTTCCCCCCCTCCT
TCCTTTCTTCCCCCCTCCCCTCCTCTCCTCCTTCCTCCCTCCTCTCCCTC
CTCCTTCCCCCTCCTCTGCCCTCCCGCCCTCTCTCACGAATCACCCCCCT
TTTCTGCTTCCTTTCTTTCCCCCTTTCCCCCCTTTTCTTCCGCTTCTATC
CCCCTCCCCCCTTCATACTCG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTACAGAGGATGAAGGAAATGCCTCCT
CCCCTGCCCCCATGCCAGAGCGCTGGGACCTGCGGGGCACAGGTGTGAGA
TGTGTCCACAAAGCCCAGATGAGAGTGGACTGAGAGATGTGTGCTCTCAC
AGGAGATTTAAGGAAGGGAATAAAGGAGAGCACTGTGGGGGAAACTAAGT
AAACAGAAAAGGATGAATTTCAGAGGAGACAGCATCTATACCAGAGGACA
TGTGACCACGGCATACCACGTTCTACAAGGGTAGTAAATACAGGGCTAGA
ATGAAGCACACTGAAGCAACCACTGAATAATTAGCTAATAAAAATTATCA
TATAATTAAATGAAGAACGTCAGGTAGGGGAGAGAAGGCGAGGCAGATAT
TTTTTTTTTCTTATTTTTTACCTTCTTCTGCCCCCTCTTTTATCTTTTTT
GTGTTTTTTTTTCTTTTTTTTTGAATATTTATTTTTTTCATTTATTTCCC
ATTTATATCTTTTTTTTTCGTTTTCTTCATTTTTTTTTCTTTGTTACCCT
TATTCTTTTCTAAAGTCTCTTCATCCTATTATTTTTATTTTTCCTCTTTG
TCACCTATTTTCCTTTCCATTTATTTTTTTCCTCTCCTTTCACTTATTTT
TCTTTCTTATTTCGCATTTTTTCTTTATTTATCTTTTTATTTTTTTATTC
TATACTACTCATTAACCACCTGTACACTATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_j13.g1 MSMg01no061_j13.g1 CHROMAT_FILE:
MSMg01no061_j13.g1 PHD_FILE: MSMg01no061_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:37 2005
         (288 letters)



>mm_chr13_24130200_24130887
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttacagaggatgaaggaaatgcctcctcccctgcccccatgccagagcgctgggacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttacagaggatgaaggaaatgcctcctcccctgcccccatgccagagcgctgggacct 260

                                                                       
Query: 61  gcggggcacaggtgtgagatgtgtccacaaagcccagatgagagtggactgagagatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggggcacaggtgtgagatgtgtccacaaagcccagatgagagtggactgagagatgtg 320

                                                                       
Query: 121 tgctctcacaggagatttaaggaagggaataaaggagagcactgtgggggaaactaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctctcacaggagatttaaggaagggaataaaggagagcactgtgggggaaactaagta 380

                                                                       
Query: 181 aacagaaaaggatgaatttcagaggagacagcatctataccagaggacatgtgaccacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagaaaaggatgaatttcagaggagacagcatctataccagaggacatgtgaccacgg 440

                                                           
Query: 241 cataccacgttctacaagggtagtaaatacagggctagaatgaagcac 288
           |||||||||  | |||||||||||||||||||||||||||||||||||
Sbjct: 441 cataccacgcacaacaagggtagtaaatacagggctagaatgaagcac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)