BAC Information

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BAC

Clone NameMSMg01-062J17
Chromosome13 (Build37)
Map Location 20,931,155 - 20,931,888
singlet/doubletsinglet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062J17.T7 (MSMg01no062_j17.b1)MSMg01-062J17.TJ (MSMg01no062_j17.g1)
ACCAG288542AG288543
length1,1831,181
length of high quality
(start - end)		725 (91 - 815)733 (89 - 821)
definitionCHROMAT_FILE: MSMg01no062_j17.b1 PHD_FILE: MSMg01no062_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:22 2005CHROMAT_FILE: MSMg01no062_j17.g1 PHD_FILE: MSMg01no062_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAATCTNTTNNNNAGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTCTGCTACAGCTTGCCTATAAATTCCTCCTCCTACTA
AGCTTGGCCTGGCCATACCCTTACAATTTTTGCCTTGCCATATCTTGGCT
TTAGATCATGATTTTTGACACTATTACATTCATCACAACCTAGGCTGACC
ACTCAAACCCTGGTTTAGGGAGAGGCAGCCTGTGTATACAAATAAAATAA
CTTGCTTTAATTGGTTGACCATGATGATTTGGGTTGGTGGTCTTCTCTAA
TCTTTGGGATTAACAAGTACCAATGGAGAAATGTAAACACCAAGCTGATC
ATAAACCCTTTAATCTACAATGATGTCCTGCCTGCAAGATACTCTAGTGC
AATGTTGGCACAAAGCTTGTGGGGGTAACTAATAAATATCTGATGTGACT
TAGGGTCCATTCCGTGAGATGGAACCCATATATGACACTGTTTGGGTGAC
CAAGAGCCTGAGACTAGATATCCCAGAGACTTAGGGTAAAACCAAATACT
ACTGTTCTAAAAACAAACAAACAAACAAACAAAACAATACAAAGCAAAAC
AAAATGTAGTATAATTTGTGTAGTTAGAATTAAGAAAAGTGACTTCTAGT
GTCTTTAAGTTATATGTGGAAAGAAATGAGGAAGCAGGTTTGTACATTTT
TCTGGAACTCAAGGCAGGAACCTAGAGGCAGGAACTGAAGTAGAGGCCAT
AGAGGAAATGCTACTTACTGGCTTACTCCTCATAGTGTGCTCAGTTTGCT
TTCTTCTACCACCTGGGACCATCTTATCTGCCCAGGGGTAGCATCTGATG
CCTAGCTCCACAGAAAGTTTTAAAAATTGCTTCATTTCACATTCTGAGTG
GGTCTAGTGTTGGGGTGCCTCACAGATCTTGCAGCCAGCAGAGAGATGGT
GTGTACAAGGTGAAGAGTGAAACTCGAGCCAGCACCATCTTTGCAGGACC
TGGGTCAAGACTTCCAGAGACTGACTTGCCAAGACGGAAATCCTGGTTTA
CCCTTCTTACCCTTTCAAGCTAATAAAGAATTTTAAAAAATTTTTCCCTT
GAAAATTTTATCCCCCCAAACCTCTTGGTCATATTACCAAGAAATCCCCT
ATAAAAAAAAAACGTTCCTTTGACTTTTCTTAT

CCGTTCTTTTTNNNAACCACGGNTAGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGACCTATCCTTTGTCCT
TTTGTTTTCACATGACCCTGAAGGGTTTTTGCTTTCCAATTTTTGTGAAG
CATTGTGTTGGAATTTTTGGCAGGGATTGTACTGAATCTGTAGATGTTTT
TTGGTAAGATGGCCATGTTCACAATATTAATCATATCAATCCCAAGCAAG
GGAGATCTCTCCATCTTTTGGTGTATTCTATCATTTCTTTATTTAGTGTA
TGTTTTTTTATAAGTTTGGTATTAATCTACTTGCATGGCTAGCATTATCA
TATTTCATTTTTGAGGCTAATGGAAAAGCCTCAAATCAAGATAGTTCCCC
TGATTCTTTCTCGACGTGTTTGTCAGTCAACAAAGGAGATCTTAGCCAAC
ATTTATATTCCTTGCTACGAGAAAATGAAATATATAATTTTATAAGAAAC
TAATCATCTTCAAATATCTGCAGAAAAATAGTATTCACAAGTATTCACAC
AATTATCTTATGGAAAGGGTTATTTTGTTATGGGTCTGAGTATCTTGCCT
ATATGCATGTCTGTGTACCACTTGTGTCCCTGGTGCTGGAGGAGTCCAGA
AGTGGGTACCTCATCCCCTAAATCTAGAGCAACAATTGGTGTGAGTCACA
ATGTGGATCTTCTGCAGCCATTGCTCCAACCCCTGGAAGTGATGCTTTAA
TAGCCACGGTAACTTTAAAATTACTGAAAGCTAATACTCAGTCATCATGA
ATCATTTAGTCTTCGTTCTTCATACAGATCAACACTGACTCGTGTTCTAA
ACTATGATTACCCAAGTATTCTATTTCCCATTTTTATTTTTCTTAGAAAA
GCTGTTCTTGAAGACCGCCCGCTATTTCTTGGTTCAAACTTTTGGCTCAG
ACATCCAAAAACTGTGAATATGGGGTATAGTTTATATATGAGTATAGACC
AAGAGTGTTGAAAATCCGCTTCCCTTTTGTTCCAAGCACTTTTCCCCCCA
AAATTTTTTGAATATGCCCCCCCTACCAATAACCCATGGGGATCCCCCCT
TAAATATGTTTGTTATTGATTGTTNTAAAAACTCCCCAAAAAAATAATTT
TGCCTCCTCNCTAGTAATTTCTTTCACTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_j17.g1 MSMg01no062_j17.g1 CHROMAT_FILE:
MSMg01no062_j17.g1 PHD_FILE: MSMg01no062_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:22 2005
         (733 letters)



>mm_chr13_20930956_20932088
          Length = 1133

 Score = 1326 bits (686), Expect = 0.0
 Identities = 722/734 (98%), Gaps = 1/734 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctttgtccttttgttttcacatgaccctgaagggtttttgctttccaatttttgtga 60
           ||||||||||||||||||||||||| |   |||||||||||||||||  |||||||||||
Sbjct: 200 atcctttgtccttttgttttcacataaagttgaagggtttttgctttttaatttttgtga 259

                                                                       
Query: 61  agcattgtgttggaatttttggcagggattgtactgaatctgtagatgttttttggtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcattgtgttggaatttttggcagggattgtactgaatctgtagatgttttttggtaag 319

                                                                       
Query: 121 atggccatgttcacaatattaatcatatcaatcccaagcaagggagatctctccatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atggccatgttcacaatattaatcatatcaatcccaagcaagggagatctctccatcttt 379

                                                                       
Query: 181 tggtgtattctatcatttctttatttagtgtatg-tttttttataagtttggtattaatc 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 tggtgtattctatcatttctttatttagtgtatgttttttttataagtttggtattaatc 439

                                                                       
Query: 240 tacttgcatggctagcattatcatatttcatttttgaggctaatggaaaagcctcaaatc 299
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcttgcatggctagcattatcatatttcatttttgaggctaatggaaaagcctcaaatc 499

                                                                       
Query: 300 aagatagttcccctgattctttctcgacgtgtttgtcagtcaacaaaggagatcttagcc 359
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 aagatagttcccctgattctttctcgatgtgtttgtcagtcaacaaaggagatcttagcc 559

                                                                       
Query: 360 aacatttatattccttgctacgagaaaatgaaatatataattttataagaaactaatcat 419
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacatttatattccttgctatgagaaaatgaaatatataattttataagaaactaatcat 619

                                                                       
Query: 420 cttcaaatatctgcagaaaaatagtattcacaagtattcacacaattatcttatggaaag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttcaaatatctgcagaaaaatagtattcacaagtattcacacaattatcttatggaaag 679

                                                                       
Query: 480 ggttattttgttatgggtctgagtatcttgcctatatgcatgtctgtgtaccacttgtgt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggttattttgttatgggtctgagtatcttgcctatatgcatgtctgtgtaccacttgtgt 739

                                                                       
Query: 540 ccctggtgctggaggagtccagaagtgggtacctcatcccctaaatctagagcaacaatt 599
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcctggtgctggaggagtccagaagtgggtacctcatcccctaaatctagagcaacaatt 799

                                                                       
Query: 600 ggtgtgagtcacaatgtggatcttctgcagccattgctccaacccctggaagtgatgctt 659
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggtgtgagtcacaatgtgaatcttctgcagccattgctccaacccctggaagtgatgctt 859

                                                                       
Query: 660 taatagccacggtaactttaaaattactgaaagctaatactcagtcatcatgaatcattt 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 taatagccacggtaactttaaaattactgaaagctaatactcagtcatcatgaatcattt 919

                         
Query: 720 agtcttcgttcttc 733
           ||||||||||||||
Sbjct: 920 agtcttcgttcttc 933


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space:   811929
Effective search space used:   811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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