Query= MSMg01no062_m18.b1 MSMg01no062_m18.b1 CHROMAT_FILE:
MSMg01no062_m18.b1 PHD_FILE: MSMg01no062_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:46 2005
(258 letters)
>mm_chr13_112139250_112139907
Length = 658
Score = 259 bits (134), Expect = 1e-73
Identities = 177/202 (87%), Gaps = 20/202 (9%)
Strand = Plus / Minus
Query: 61 atattctctatttttatgactgtg----ccccagtttatattattggtcaactaattaca 116
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 391 atattttctatttttatgactgtgtagt----agtttatattattggtcaagtaattaca 336
Query: 117 atacattctaacaacaatatttaaaaggaagagtggccaatgtttgcagaacatgttttg 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 335 atacattctaacaacaatatttaaaaggaagagtggccaatgtttgcagaacatattttg 276
Query: 177 cttgctggatgtaccgcgtgtgcatgtgtgtgtgcgcatgtagatgtttgtgtgtgtgag 236
|||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 275 tttgctggatgtacc--------atgtgtgtg----catgtagatgtttgtgtgtgtgag 228
Query: 237 ggtatatgtatgtgtatatgtg 258
||| ||||||||||||||||||
Sbjct: 227 ggtgtatgtatgtgtatatgtg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space: 161601
Effective search space used: 161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no062_m18.g1 MSMg01no062_m18.g1 CHROMAT_FILE:
MSMg01no062_m18.g1 PHD_FILE: MSMg01no062_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:46 2005
(800 letters)
>mm_chr13_111995010_111996209
Length = 1200
Score = 1392 bits (720), Expect = 0.0
Identities = 777/796 (97%), Gaps = 2/796 (0%)
Strand = Plus / Plus
Query: 6 atgagctatatacaccactgcatgttttcatccgttatagagtttcgttgcttcccactg 65
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 206 atgagctatatacaccactgcatgttttcatccattgtagagtttcgttgcttcccactg 265
Query: 66 acatgggcattttcaatctggagaccttggccaagtcacctgaccccaaggcagcctgac 125
|| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 gcacgggcactttcaatctggagaccttggccaagtcacctgaccccgaggcagcctgac 325
Query: 126 tcttccatctgttttacggtagtaataagatcaccttgctcgctttgattctgatgcttt 185
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 326 tcttccatctgttttatggtaataataaaatcaccttgctcgctttgattctgatgcttt 385
Query: 186 accgttgttttatgcattgtttcccccatttattcactgtataagccacagttggtagaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 accgttgttttatgcattgtttcccccatttattcactgtataagccacagttggtagaa 445
Query: 246 atgaggcaaagtgcaagatacagaagtgaacaaatgttcctggcctacagaacttactta 305
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 446 atgaggcaaagtgcaagatacagaagtgaacaaatattcctggcctacagaacttactta 505
Query: 306 catccagctgggagtggggaggagaggtgctccaacaacaaaagcaaaactgaaatgcag 365
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 506 catccagctgggagtggggaggagaggcgctccaacaacaaaagcaaaactgaaatgcag 565
Query: 366 agtccatagagctctttggaagacaggatgactgtcgggaaggagaatcctcaatgataa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 agtccatagagctctttggaagacaggatgactgtcgggaaggagaatcctcaatgacaa 625
Query: 426 ggtgggaagtagaaaaataagaaaacatgtcattgatgatcttcctaggacagaaaatac 485
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 626 ggtgggaagtagaaaaataagaaaacatgtcattgatcatcttcctaggacagaaaatac 685
Query: 486 taaagagtccattcttcattctgatctgctcccagaataaactcagaatgaattctctga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taaagagtccattcttcattctgatctgctcccagaataaactcagaatgaattctctga 745
Query: 546 atggccaggattgagtacaacatcttgtacaagatttaccaaaatgtcttatgcggatct 605
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 746 gtggccaggattgagtacaacatcttgtacaagatttaccaaaatgtcttatgcagatct 805
Query: 606 tggttttccaacaggggggcagcgacaggcttcatcatttgagggaagatcacagaaccc 665
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 806 tggttttccaac-ggggggcagtgacaggcttcatcatttgagggaagatcacaaaaccc 864
Query: 666 gagcttgttgctttgaggttctagtctctagtcttcataaggcatttgttacttcttttt 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gagcttgttgctttgaggttctagtctctagtcttcataaggcatttgttacttcttttt 924
Query: 726 tttt-aactaaagtaactattttgtttgatggtttgttttaatgaatctgagaaatgagg 784
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tttttaactaaagtaactattttgtttgatggtttgttttaatgaatctgagaaatgagg 984
Query: 785 caaatgatatgaaaat 800
||||||||||||||||
Sbjct: 985 caaatgatatgaaaat 1000
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 800
Length of database: 1200
Length adjustment: 10
Effective length of query: 790
Effective length of database: 1190
Effective search space: 940100
Effective search space used: 940100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
