BAC Information

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BAC

Clone NameMSMg01-062N18
Chromosome13 (Build37)
Map Location 39,642,999 - 39,743,155
singlet/doubletdoublet
Overlap genenone
Upstream geneMuted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
Downstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894, LOC100039048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062N18.T7 (MSMg01no062_n18.b1)MSMg01-062N18.TJ (MSMg01no062_n18.g1)
ACCAG288735AG288736
length1,1531,146
length of high quality
(start - end)		685 (126 - 810)792 (88 - 879)
definitionCHROMAT_FILE: MSMg01no062_n18.b1 PHD_FILE: MSMg01no062_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:53 2005CHROMAT_FILE: MSMg01no062_n18.g1 PHD_FILE: MSMg01no062_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:53 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(39,642,999 - 39,643,569)(39,742,478 - 39,743,155)
sequence
NCCATTTCTTNNNNNGTCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTGTCTTATNACCCTTTAAATGACCACTCTGGGTAA
GCCCAGATGGTATATATCTTTATATTTTAAGCATGCGCCCTTGCCATTTG
GCAGAAAAGAAAATTTAAGAGCTTGAAAGAATGAATAAACTTTTACTCCG
TAGCAAGAGGCAAGTTTTCCAGGATTGCTTTATAATATTATAATTTATTC
TGGACTTTTCCTAGTCAAGATAAGTGTTTCTGCTCGGTAGCCTGTGAATG
TAGTTTAACAGGTTATGGTATCCAGAAAACTTTGGGTCAACTATTCCAAG
CCACCACATTTTATTAGAAATTTGCATGGCCTCCTCTTCACTGACAGGAA
ATATTCAGGAATAAGAGGTTTGCTGTTAGCAGGGACTACCAACTTTGGCA
GCACAGTCACCTCTCTGCAGGTGCCTTACTGGAACCTCATTTCCCAGGGA
TGCTGTGCACTCACCCACCCCTTAGTTTGTCTGGATCTGAAAGGGTTTTC
TCAGGTCAAATGTGCACTTTCTAGAGTTCGGTAAGAAAATCCAGGGTGTG
ACTTTATTTACACTGCTTCTGTCTGGGAACAGGAGTACACAAGCTATCCA
TCATGAATGAGGGTGCACTTAAACTGCATTCATAAGCAATAAATCTGCTT
TAGATCGTCTCATACCCACATTCCCATTTCAAGTATTTAGGAGGACTTTC
CTCCCTGTGAGGAAGAGAGGCTTATTTATAGGGTACAAAATAGAAATAGA
AAGGCAGATTTTAGGGGATTGGAAATCACATCGAAACACAAGCTGAGCAG
CGTTTGATTCGGATGACATACACCCAAGTGGAATTTGGGCATTGAGAATC
ACACATTGTTCTGTCTGTAAGAAACCAAGAGTGAGCTACGGGTGTTAACT
CAGAGAAAGAGTTCAACTTAGAAGAAGCTAAGCACTGGATTCTATCCACA
AAAGGGGAAAAATGGAAGGAAACTTAGGGAGAAAAGGAACCAAGACTTTG
CCCATTTCTAAAAAACTATCCGGGTGTTTCCTTCCCCCAAAAACCTGGAA
AGCCCAACTGGTCCTGTCCCCCCGGGTTTCTTACAAAAAATTTTGAAGCC
CCG

CCTTATCTTTTTNTAAGACGGNTAGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGTTGGCATCTTTCCTAGA
CAGGCTTGCCAGCAAGCTCCCTGAATCTGCCCATCCCTTCACTACCTTAG
AATTGTGGTGGACATGCATTGTTAATTCTTAGCTTTACTTTAGTACCGGG
GATTCAAACCCATATCCTCATGCCTGAGCAGCAAGCACTTTCCCCACTGT
GTCATCTCCCCAGCCCCTCTCCTGCATGTTTAACGCAATATTTGCTTAAG
AAGCAGGCTTAGTTTTCCGTGACACAGAAAATTCCTATCCCTCTCACTTT
GTTCCAAAATTATATTAATGGAGTTCCTGTCATGGGAATAAATTAAAATG
GGGCATACGGCATATGGAACGAGGTGGTATTTCTGCACTATGCAAATTAC
AAGAAAACAATCCCAGTTAGATCCTACCAGTGACCTCGAGGCTGACACAG
GGGAGTTCCTGGAGCCTATGGAACCGTGCAGCGAGTGGGTTCATTCAGCA
AAGAGCATGTGATTGTTAAGAAACTTCATTTAGAATCCTTCAGTGGGAGT
TTATGAAAGGACTGCTCACATTTAGGTTAGAATGGGCAATTCCTTGTAGC
TGTGTACATTTCATATTGTATTTAAGTCTTGAAAATTTCTGTCAGAATCA
TGTTTAATGACAGAGAGAGAGAAAGACAGAGTTGAGAACTAAAACCATCA
TATTGAAATAGCAAATCTTCTGATCTTTAGGATTTTCTGCCTGACCCCAT
TGCTCTTAGATGTCTAACCTTTTACTAACATAAAGGAAAAATACAAAATA
CACCCCCCAGGCTTCTAATAATCATGTCCTTTAACCTTTCACCTCTCTAT
TATAATTTAATAAGCAAGGCAAAATTTGTTGTAAGAACCCATTACCGACT
TAAACAAACCATATTCAAATACTAGCCCCTTTCGTAGCAATATTTCAATA
TTGCAGTTTGCCCCAAGTTTTTATCCATACCTAAAGGAGTTACCTATTTT
TTCAAAAGTACCAATTTTATTTTTTTGAAAAGGGATCTAGAACCTTGGAT
ATTTGGGGGTAAAAAACTTTTTTTAGGGCCTTTTTCCCTTAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_n18.b1 MSMg01no062_n18.b1 CHROMAT_FILE:
MSMg01no062_n18.b1 PHD_FILE: MSMg01no062_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:53 2005
         (685 letters)



>mm_chr13_39642685_39643769
          Length = 1085

 Score = 1081 bits (559), Expect = 0.0
 Identities = 568/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 115 ataatttattctggacttttcctagtcaagataagtgtttctgctcggtagcctgtgaat 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ataatttattctggacttttcctagtcaagataagtgtttctgctcggtagcctgtgaat 374

                                                                       
Query: 175 gtagtttaacaggttatggtatccagaaaactttgggtcaactattccaagccaccacat 234
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtagtttaacaggttatgatatccagaaaactttgggtcaactattccaagccaccacat 434

                                                                       
Query: 235 tttattagaaatttgcatggcctcctcttcactgacaggaaatattcaggaataagaggt 294
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttattagaaatctgcatggcctcctcttcactgacaggaaatattcaggaataagaggt 494

                                                                       
Query: 295 ttgctgttagcagggactaccaactttggcagcacagtcacctctctgcaggtgccttac 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgctgttagcagggactaccaactttggcagcacagtcacctctctgcaggtgccttac 554

                                                                       
Query: 355 tggaacctcatttcccagggatgctgtgcactcacccaccccttagtttgtctggatctg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tggaacctcatttcccagggatgctgtgcactcacccaccccttagtttgtctggatctg 614

                                                                       
Query: 415 aaagggttttctcaggtcaaatgtgcactttctagagttcggtaagaaaatccagggtgt 474
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 615 aaagggttttctcaggtcaaatgtgcactttctagagttcagtaagaaaatccagggtgt 674

                                                                       
Query: 475 gactttatttacactgcttctgtctgggaacaggagtacacaagctatccatcatgaatg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gactttatttacactgcttctgtctgggaacaggagtacacaagctatccatcatgaatg 734

                                                                       
Query: 535 agggtgcacttaaactgcattcataagcaataaatctgctttagatcgtctcatacccac 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agggtgcacttaaactgcattcataagcaataaatctgctttagatcgtctcatacccac 794

                                                                       
Query: 595 attcccatttcaagtatttaggaggactttcctccctgtgaggaagagaggcttatttat 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 attcccatttcaagtatttaggaggactttcctccctgtgaggaagagaggcttatttat 854

                                          
Query: 655 agggtacaaaatagaaatagaaaggcagatt 685
           |||||||||||||||||||||||||||||||
Sbjct: 855 agggtacaaaatagaaatagaaaggcagatt 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no062_n18.g1 MSMg01no062_n18.g1 CHROMAT_FILE:
MSMg01no062_n18.g1 PHD_FILE: MSMg01no062_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:53 2005
         (792 letters)



>mm_chr13_39742098_39743289
          Length = 1192

 Score = 1272 bits (658), Expect = 0.0
 Identities = 673/678 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    catctttcctagacaggcttgccagcaagctccctgaatctgcccatcccttcactacct 60
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1058 catctttcctagacaggcttgccagcaagccccctgaatctgcccatctcttcactacct 999

                                                                        
Query: 61   tagaattgtggtggacatgcattgttaattcttagctttactttagtaccggggattcaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  tagaattgtggtggacatgcattgttaattcttagctttactttagtaccggggattcaa 939

                                                                        
Query: 121  acccatatcctcatgcctgagcagcaagcactttccccactgtgtcatctccccagcccc 180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 938  acccatatcctcatgcctgagcagcaagcactttccccactgtgccatctccccagcccc 879

                                                                        
Query: 181  tctcctgcatgtttaacgcaatatttgcttaagaagcaggcttagttttccgtgacacag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  tctcctgcatgtttaacgcaatatttgcttaagaagcaggcttagttttccgtgacacag 819

                                                                        
Query: 241  aaaattcctatccctctcactttgttccaaaattatattaatggagttcctgtcatggga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  aaaattcctatccctctcactttgttccaaaattatattaatggagttcctgtcatggga 759

                                                                        
Query: 301  ataaattaaaatggggcatacggcatatggaacgaggtggtatttctgcactatgcaaat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  ataaattaaaatggggcatacggcatatggaacgaggtggtatttctgcactatgcaaat 699

                                                                        
Query: 361  tacaagaaaacaatcccagttagatcctaccagtgacctcgaggctgacacaggggagtt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  tacaagaaaacaatcccagttagatcctaccagtgacctcgaggctgacacaggggagtt 639

                                                                        
Query: 421  cctggagcctatggaaccgtgcagcgagtgggttcattcagcaaagagcatgtgattgtt 480
            ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 638  cctggagccgatggaaccgtgcagcgagtgggttcattcagcaaagagcgtgtgattgtt 579

                                                                        
Query: 481  aagaaacttcatttagaatccttcagtgggagtttatgaaaggactgctcacatttaggt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  aagaaacttcatttagaatccttcagtgggagtttatgaaaggactgctcacatttaggt 519

                                                                        
Query: 541  tagaatgggcaattccttgtagctgtgtacatttcatattgtatttaagtcttgaaaatt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  tagaatgggcaattccttgtagctgtgtacatttcatattgtatttaagtcttgaaaatt 459

                                                                        
Query: 601  tctgtcagaatcatgtttaatgacagagagagagaaagacagagttgagaactaaaacca 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  tctgtcagaatcatgtttaatgacagagagagagaaagacagagttgagaactaaaacca 399

                              
Query: 661  tcatattgaaatagcaaa 678
            ||||||||||||||||||
Sbjct: 398  tcatattgaaatagcaaa 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1192
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1182
Effective search space:   924324
Effective search space used:   924324
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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