XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACAT
TGTGCTGAGTCAATAAGGAAAAACTAACAATCCTGGGCGAGCAATGTCTC
AGGAGTAAAGGGCTTCCTAAGAAGCCGGGCCACCCGGGTTCCATACCTAG
CACTCACATCCTGGAAGGAGAAAACTAAGTCCCACAGGTTGTTCTCTGAC
TTCTGCATGTGCCCCCCACACATATGCAAACAAATAAGACACTATTTAAA
AATTAAAGTGGAGCTTTCTCCCTTTTCTATCCCCATTGCATGTTTCCAGA
GTGAACATGTTCCCCTTTGATGAGGCCCCTTAAACCTTTATAGCTTTTGA
AATTCTGGTTTCTTTCTTTTTATTTCTTTTAAAGATTTATTTAAATAAAT
GTCTGTGAGTACATTGTCGCTCTTCTTCAGACATATCAGAAGAGGTCATT
GGATCCTATTACAGATGGTTATGAACCACCATATATATATATATGGTTAC
TGGGAAATGAACTCAGGACCTCTGGGGGAGCAGTCAGTGCTCTTCACCTC
TGTGCCATCTCTCTAGACCTTTATTTATTTATTTGTTCATTTGACAAATT
TTGTTTGTGGTTTGACAGTTGAAGCCAGGAGCTTGCTGGGAATAAACAGT
CAGTCTTCTTGCTGA

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNCC
NNNNCCCCNNNNNCCCCCTTTTCCCCCCCCNNNNCNNAATACTNCCCCCN
NNNNCNNCCCNNTCNCNCCTNNCCCCNNNCCNCCCCCCACATTCACACTT
TCCCCTCCCATCCCCCCCCCCTCCCCCCCNTTCCCATACCACTTTCTACA
CCCATACTATCACCCACCCCTCCTACCCTCCCCCCCCCCAANNCCCTNCC
CCATACTCCCCTCACACACTTCTCCATCCCACTACCATCACACCCCCTCT
CCACCCAAACCACCCTACCCTCATCCAACACTCATCCCACTTTTCAAACC
ACAATCCCAACCCTCATTCAACACTCCCCTAACCTCTATTTAATATTTGT
NNAAAGGTGTNCTAATAAGACTNTCTATACCTTCTTCATCCCCTGTCCTC
CTTTATTCTCTTTCAAACACAACATTTATTTCNTNNNNNNNNNNNNNNNN
NNNTTTGTACTGTTTNNNNACTCGCTTGAAGGCAGCGGNNNNNNNNNNNN
NNAGAGAGAAGAACNAAAGGCAAATCACTTNNNNNNAGAGAGAAAAANNN
NNNNNCGCAAATGCAATAGGTGGGTTAAGNNCCGGGGGACGGGGCCGAAA
CAGAGATCCGTTTCAACACATTTTTAAGGTTGAAACAACTAATAGGAAAG
GGTATTCCCGCCGGGTTATATTTCAAAAACTTTTTTTTTCCAAGAACTCC
AAGGCAAATTCCCCCCAAAATGGCCTGGGAAAAATTAAATTAAGGGTTAA
AAATTAACCCTTTTTCAAAAATTCCAAAGGGGGTTTTCAATTAAAGAAAT
TAAACCTTTTTAAATTAAAATTTTTTGGGGGTTTTTTAAAATAAAAAATT
T

Query= MSMg01no063_a01.b1 MSMg01no063_a01.b1 CHROMAT_FILE:
MSMg01no063_a01.b1 PHD_FILE: MSMg01no063_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:11 2005
         (559 letters)



>mm_chr13_118073974_118074932
          Length = 959

 Score =  870 bits (450), Expect = 0.0
 Identities = 547/616 (88%), Gaps = 60/616 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaataaggaaaaactaacaatcctgggcgagcaatgtctcaggagtaaagggcttcct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 146 gtcaataaggaaaaactaacaatcctgggcaagcaatgtctcaggagtaaagggcttcct 205

                                                                       
Query: 61  aagaagccgggccacccgggttccatacctagcactcacatcctggaaggagaaaactaa 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aagaagccgggccacctgggttccatacctagcactcacatcctggaaggagaaaactaa 265

                                                                       
Query: 121 gtcccacaggttgttctctgacttctgcatgtgccccccacacatatgcaaacaaataag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 266 gtcccacaggttgttctctgacttctgcatgttccccccacacatatgcaaacaaataag 325

                                                                       
Query: 181 acactatttaaaaat---------------------taaa-------------------- 199
           |||||||||||||||                     ||||                    
Sbjct: 326 acactatttaaaaatgaaaactaaccagaaccgctttaaatgctagattatctccctagc 385

                                                                       
Query: 200 --------------gtggagctttctcccttttctatccccattgcatgtttccagagtg 245
                         ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 386 tattcgttttcaaagtggagctttctcccttttctatccccattggatggttccagagtg 445

                                                                       
Query: 246 aacatgttcccctttgatgaggccccttaaacctttatagcttttgaaattctggtttct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 446 aacatgttcccctttgatgaggccccttaaacctttatagcttttgaaattctggtttcc 505

                                                                       
Query: 306 ttctttttatttcttttaaagatttattt--aaataaatgtctgtgagtacattgtcgct 363
           |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||| ||
Sbjct: 506 ttctttttatttcttttaaagatttatttttaaataaatgtttgtgagtacattgtcact 565

                                                                       
Query: 364 cttcttcagacatatcagaagaggtcattggatcctattacagatggttatgaaccacca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttcttcagacatatcagaagaggtcattggatcctattacagatggttatgaaccacca 625

                                                                       
Query: 424 tatatatatatatggttactgggaaatgaactcaggacctctgggggagcagtcagtgct 483
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tatatatatat--ggttactgggaaatgaactcaggacctctgggggagcagtcagtgct 683

                                                                       
Query: 484 cttcacctctgtgccatctctctagacctttatttatttatttgttcatttgacaaattt 543
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 684 cttcacctctgtgccatctctctagacctt-atttatttatttgtttatttgacaaattt 742

                           
Query: 544 tgtttgtggtttgaca 559
           ||||||||||||||||
Sbjct: 743 tgtttgtggtttgaca 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)