BAC Information

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BAC

Clone NameMSMg01-063A09
Chromosome13 (Build37)
Map Location 55,499,473 - 55,499,775
singlet/doubletsinglet
Overlap genenone
Upstream geneThoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14
Downstream geneSlc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A09.T7 (MSMg01no063_a09.b1)MSMg01-063A09.TJ (MSMg01no063_a09.g1)
ACCAG288860AG288861
length765797
length of high quality
(start - end)
307 (108 - 414)158 (134 - 291)
definitionCHROMAT_FILE: MSMg01no063_a09.b1 PHD_FILE: MSMg01no063_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:13 2005CHROMAT_FILE: MSMg01no063_a09.g1 PHD_FILE: MSMg01no063_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNCCCCCCCCCTCNNCNCCC
CCGTCTTNNNNCGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCTTTATCTCACGGGGAGCTAAGCAGGCTGGGCT
GAGGTTGGGATGTCTGAGGAAGAAGAAGAGGAAACCACAACAAGAGCAGG
GGTGATGGGCCAGGGATAGGGTTGAGAGACCAGGCTCTGGGGTCACCTTG
AGGTTCTCTGCCAACAGAGCTTCAAGACTCCCCAGCTGTCCTCTGATGAC
TCAGGGTCCCTGGAACTGCAGATCCACTCAGTGTCTTCAGGGTAACATTT
ATCTAACTGTTCTCTACCACAGAAGACAGGCCCCTCTGCACATTCCTGCT
TCAAGTTAAGCAAGGTTAACTGATCAGTCCTTTACCGCCCGTGCTTAGCG
ACTCTCCGAGGGCTCTCTGTGCTGTGCCGAGTAGTGCATAACCGACCCTG
CTTGGTCAGATCCCAGCTCCTCCTAATGCTATAATTCTTTTCTTTATTAA
TGTTCCAATGGCATTGCTAAAGGACGTGTAGTACAGTCGCGAATTGGCTT
TTTTGATGTCTGAAGCTGGATCCTGAAGCACTGTACTATGCTACCAACGT
GATTTGTACCCTGGGTTTGTTCTCTTCCCTTTTTATGTAATAAGCGACAT
AAAATTAGCTCTGAAATTTATCCCCCCCTAACCCAAGTTTTCCCGGATTA
ATGGCTTTTTTTGCC
NNNNNNNNNNNNNNNNNNNNNTTTCCCCCTNCCCNNCCCCCCCCNNCNCC
CCCNCCCCTACTATGATATGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTGCAAACTGATC
TTTTTTTTTGTTTGTTTGTTTGGTTGGTTTTGGTTTTTTGAGACAGGGTT
TCTCTGTGTAGCGCTGGCTGTCCTGGAACTCACTTTGTAAACCAGGCTAA
CCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAT
GATCTTTTCACTTTACGTCATGCCCACTTACAATGTGATATTACCCTGGC
CAATATGCCCTATATCAGTAATCCCTTCACTCCGGAGGCTATAGGTTGTA
TTTGATTTTGAAGCTTTTTTTTCCCCCCCCCCCCCCACCTCTACTGGCGT
GTCCCCTTGTACCCCATCTTTCCCCTCCCCTCCCAAAACAAACCATAATG
GTTCCTTCATCCCCCACCACTCCACTGCTATCTCCCCTATTTCCTGTATC
CCCCCCCCCTATACATTATCCCTTTCCCTTTATACCCACCCCTCCCTTAA
CCTTTACATTCCCCTCACCATTCCGCTTTCCCCTATCTCCCTAACACTTC
TACCTCATGCCTCCTCCCCTTTTACCCTCCCTTCCCCTTCCCCCCTCCCC
TTTTTATATCCTCCCTCACCTATCAAAATCCTTTAACCACCCCTTCTCCC
CTCTCCCTCATTCCCCCATTCTCCTCCCCTCCTTCTTCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a09.b1 MSMg01no063_a09.b1 CHROMAT_FILE:
MSMg01no063_a09.b1 PHD_FILE: MSMg01no063_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:13 2005
         (307 letters)



>mm_chr13_55499269_55499975
          Length = 707

 Score =  547 bits (283), Expect = e-160
 Identities = 298/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttatctcacggggagctaagcaggctgggctgaggttgggatgtctgaggaa 64
           ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 507 gaattcctttaactcagggggagcaaagcaggctgggctgaggttgggatgtctgaggaa 448

                                                                       
Query: 65  gaagaagaggaaaccacaacaagagcaggggtgatgggccagggatagggttgagagacc 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcagaagaggaaaccacaacaagagcaggggtgatgggccagggatagggttgagagacc 388

                                                                       
Query: 125 aggctctggggtcaccttgaggttctctgccaacagagcttcaagactccccagctgtcc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 aggctctggggtcaccttgaggttctctgccaacagagcttcaagactcctcagctgtcc 328

                                                                       
Query: 185 tctgatgactcagggtccctggaactgcagatccactcagtgtcttcagggtaacattta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctgatgactcagggtccctggaactgcagatccactcagtgtcttcagggtaacattta 268

                                                                       
Query: 245 tctaactgttctctaccacagaagacaggcccctctgcacattcctgcttcaagttaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctaactgttctctaccacagaagacaggcccctctgcacattcctgcttcaagttaagc 208

              
Query: 305 aag 307
           |||
Sbjct: 207 aag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)