BAC Information

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BAC

Clone NameMSMg01-063J04
Chromosome13 (Build37)
Map Location 29,302,928 - 29,303,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063J04.T7 (MSMg01no063_j04.b1)MSMg01-063J04.TJ (MSMg01no063_j04.g1)
ACCAG289278AG289279
length690681
length of high quality
(start - end)
294 (66 - 359)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no063_j04.b1 PHD_FILE: MSMg01no063_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:59 2005CHROMAT_FILE: MSMg01no063_j04.g1 PHD_FILE: MSMg01no063_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTCCTCACCATCCACAAAAATTTATAATCCCAGCAGCACTGAGA
GCAGGAGGGAAAGGTGGATATCTGGGGTTTTCACTGGCATCTAGCCAAAC
TTGTGAGCCAGCCACAGGTCTCAGTGAAAGCCCTGTTCAAAACACAAGGT
AGGTGGTTGCTGTGGATTGCTGTTTGGATTTTCTGCTCCCTCAAGAGGTC
AGGTGAAATGCTCATTGGTCAGATAAGGCTAGAGCCTGTGATTGGGCAAT
AGAAGGAAAAGGCAGAGCTGAAAGTTTTAGAGAGGAGAAAGGAAGAAGAA
GAAAAGAGACAGGGAATGGAGGATGGAGGGAGACAAGATGGAGGGAGAAG
GAGAAGATGATGGAGCTGACTCCATGTGTCTTGATGATGCTTCCCTTATC
TTCCTATAGATGTAATACATGATCATTATAGCATTGAACGTCCACACTGC
CACATCTATGTATGCATCACGCACTCAAATCAATACCATATTTTTGTTGC
CATCTACTTCTATTTCCTCTTTAATAACATCCTCTCCATTTCACCCTAAA
ATTTTTTATCCCCCCCTTAATACCCCCACAAAAATACCTTACCATCCGGT
TAATTGAATGCTTTAATCCCTATAACTACTCTACATATCA
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTGCCTTTAAAAGGGGAACGAAACT
TATTTTTATCTCTACATCTATAAATAATTATGTGTGTTAGAAGTAATGCT
AGGTTTTTTTCTTATGTCAGTGTCAGTGAGCACAAGAAAGGGTTAAATGT
ATTGGGAGTCGTCAGGTTCCAAGAAAGATCTGAGCAGCCTACAGCAATAT
ATAAAATTTAAATCGAGATGTTAGCTTGTTTCGTCAATTAAAATTAAAAT
ACATATAAAACAAAATATATGCACACACTTCCCCTGGCCTTTGACTTCTT
TCTTTTAAATTTTGAGATGCGCATCTCACTAAGTTGTCCAAGATAGTTTC
GAACTTACTCTGGAGTGCAAGCAGACTGGTGATGCTCCTGCCTTGTGGTC
TTGAGCAGCTTAGATTACAGACCTGTATCACTAGGCCTCACTCCACAACA
CATAGCCTTTTTAAAGTGCACAAGTCAATAGTATTAATTATGTCCACATT
GCTACGCAACCAGTCTCCTATACTAATTCTGTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCCTCCTCTTCTTCTTCTTCCTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_j04.g1 MSMg01no063_j04.g1 CHROMAT_FILE:
MSMg01no063_j04.g1 PHD_FILE: MSMg01no063_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:59 2005
         (294 letters)



>mm_chr13_29302728_29303421
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgcctttaaaaggggaacgaaacttatttttatctctacatctataaataattatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgcctttaaaaggggaacgaaacttatttttatctctacatctataaataattatgt 260

                                                                       
Query: 61  gtgttagaagtaatgctaggtttttttcttatgtcagtgtcagtgagcacaagaaagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttagaagtaatgctaggtttttttcttatgtcagtgtcagtgagcacaagaaagggt 320

                                                                       
Query: 121 taaatgtattgggagtcgtcaggttccaagaaagatctgagcagcctacagcaatatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatgtattgggagtcgtcaggttccaagaaagatctgagcagcctacagcaatatata 380

                                                                       
Query: 181 aaatttaaatcgagatgttagcttgtttcgtcaattaaaattaaaatacatataaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatttaaatcgagatgttagcttgtttcgtcaattaaaattaaaatacatataaaacaa 440

                                                                 
Query: 241 aatatatgcacacacttcccctggcctttgacttctttcttttaaattttgaga 294
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aatatatgcgcacacttcccctggcctttgatttctttcttttaaattttgaga 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)