BAC Information

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BAC

Clone NameMSMg01-063J12
Chromosome13 (Build37)
Map Location 45,515,885 - 45,516,224
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip
Downstream geneGmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063J12.T7 (MSMg01no063_j12.b1)MSMg01-063J12.TJ (MSMg01no063_j12.g1)
ACCAG289294AG289295
length757864
length of high quality
(start - end)
367 (119 - 485)44 (135 - 178)
definitionCHROMAT_FILE: MSMg01no063_j12.b1 PHD_FILE: MSMg01no063_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:01 2005CHROMAT_FILE: MSMg01no063_j12.g1 PHD_FILE: MSMg01no063_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCC
CCCCNNNNNCCCACTACCCCCCCTCCCTATAAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCCGCGGAATTCTAAAATTACCGTTTTTTTTTT
CTTTTCTTCTATCACTTTCATGTTTGAAAGGTCATTTTCCTTCCGAGAGG
CAGCAGTTCTACCCTTCCCCGGTTCCTTTCTGATTCTGTAACAAAACACC
TGAGATCAGAAGATTTATAAAGAACTGAGGTCTATTGGCTCCAGGGTTTG
GAGACCAAAGTCCCAGCACCCAGCACCCAGTACCAACATCTATCTGTTCA
TCACAACAAGGCAAGGGCATCTCACAGAAAGTCAAAACTACTTGAAGCCC
CCCACCCCCTTCAAGACAGTCCTTGGTCATCATGTTTGACATACCCTTAC
AACCTCATCTGATCCTAGTGACCTCCCAAAGTCTGACTCTCCAAACGCCA
CTCCCAGGGTGAATCTGGACAGCAAATTTCCAGCACAGGACGTTCTCATA
GACACATCCAACCCATAACAGTTGTCCACAGGTCAGGCTAGAATACGAAA
AAATCCTGCTTCCAATGAATTCCTCTAGGGCCACTGATGCATCCTGTTAC
CTTGTAATGCCTGACCAGTAAAATCACCCTGTCTGTTTCACATCTTTATT
CATAGCCTCTTCTTGCTTTGGGTTCATTCAGTTGCCCTCCTCATGCCCAG
TTTCCGC
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCNCCCCCCCCCCCCCCCC
CTCCCCCTACGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTGAGAGGGTCCC
TCTCCTCTTAGTCTTGTTGGTAATAGTGCCCTTGCTGGTTGGTGGGTTGA
TTATCCCCCCCTTTCCTCCCCTTCCCTTACCTCCCCCCCTCCCCTATTTC
CCTTCCCCACCCCCATCCCCTCTCCCACTCTTCCCCATTTCCTCATTTAC
CCCTCCTTCCCCTCCCCCTCCTCCCCTTTCCCCTTTCTCCTTTCTTCCTT
ATCCTTTCTTCTTCTTTTTCCCCCTCCTCCTTTCTTCTTTCCCTTCCTTC
CTTTTACTTCTTCCTCTTTCCCCCCCTTCTTATTCTTTCCCCCCCCCCCC
CCCCCTTCTTCTCCAATCCCCTTTTTCCCCCCTCTTTTTCCTTTTTCCCT
CACACCCACTTCCATAATTATTACGTTTATCTCCACATCACCCACAAATA
TCTATCCTTCCTCTTGTCACTTTTATCCCTCGCCCCTTTTTCACTTATCT
CCATTCTCCTCTTTCCCTCTCCTCCACTTTTTTCTTTTTCCTTTTCCTCT
TTCCCCTTTCCCTTCTTCCCGCTTATTACCCTACCACCTTTATTCCTATT
TCCCTATCTCCCACCTTCTCCCTATCTATCCCCACCTTCCCCCCCTTCTC
CTTCTTTTTATCCATCCCCTCACCTTTCCTTCTCACCGTTTCCCTTCTCC
ATTTACCNCCCTTCCTATTTATCCACCTCTATTATCCACCTCCTTTTCTC
TCCCACCCTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_j12.b1 MSMg01no063_j12.b1 CHROMAT_FILE:
MSMg01no063_j12.b1 PHD_FILE: MSMg01no063_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:01 2005
         (367 letters)



>mm_chr13_45515658_45516424
          Length = 767

 Score =  571 bits (295), Expect = e-167
 Identities = 331/347 (95%), Gaps = 8/347 (2%)
 Strand = Plus / Plus

                                                                       
Query: 22  gttttttttttcttttcttc-tatcactttcatgtttgaaaggtcattttccttccgaga 80
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct: 228 gttttttttttcttttcttcatatcactttcatgtttgaaagctcattttccttctgaga 287

                                                                       
Query: 81  ggcagcagttctacccttccccggttcctttctgattctgtaacaaaacacctgagatca 140
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 288 ggcagcagttctacccttccccggttcctttctgattctgtaacaaaacacccgagatca 347

                                                                       
Query: 141 gaagatttataaagaactgaggtctattggctccagggtttggagaccaaagtcccagca 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaagatttataaagaactgaggtctattggctccagggtttggagaccaaagtcccagca 407

                                                                       
Query: 201 cccagcacccagtaccaacatctatctgttcatcacaacaaggcaagggcatctcacaga 260
           |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cccag-------taccaacatctatctgttcatcacaacaaggcaagggcatctcacaga 460

                                                                       
Query: 261 aagtcaaaactacttgaagccccccacccccttcaagacagtccttggtcatcatgtttg 320
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 461 aagtcaaaactacctgaagccccccacccccttcaagacagtccttggtcatcatggggg 520

                                                          
Query: 321 acatacccttacaacctcatctgatcctagtgacctcccaaagtctg 367
           |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 521 acatacccttacaatctcatctgatcctagtgacctcccaaagtctg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)