Query= MSMg01no063_n05.b1 MSMg01no063_n05.b1 CHROMAT_FILE:
MSMg01no063_n05.b1 PHD_FILE: MSMg01no063_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:21 2005
(563 letters)
>mm_chr13_57713109_57714075
Length = 967
Score = 1038 bits (537), Expect = 0.0
Identities = 558/567 (98%), Gaps = 4/567 (0%)
Strand = Plus / Plus
Query: 1 aggaaaatgacggacagataaacaatggaatctacactc----tatacatgggactaatg 56
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aggaaaatgacggacagataaacaatggaatctacactccagctatacatgggactaatg 260
Query: 57 gctattcacatgatgtatggggcctggatggtaaggagcttgctgggcatccattctttt 116
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctattcacatgatatatggggcctggatggtaaggagcttgctgggcatccattctttt 320
Query: 117 tcatcttcacccagtgtcttatatctgatgtgcagtgttagtgggactggagttcttgaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatcttcacccagtgtcttatatctgatgtgcagtgttagtgggactggagttcttgaa 380
Query: 177 gatgttagcctgtcatttacgtgtgaagacaccagacactccttttcctaagccacagca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgttagcctgtcatttacgtgtgaagacaccagacactccttttcctaagccacagca 440
Query: 237 tagctatgggcaggtttccaggattgctaagtctccagggaaggcttcagaaaaaaaatc 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tagctatgggcaggtttccaggattgctaagtcttcagggaaggcttcagaaaaaaaatc 500
Query: 297 tgaacatcaaatatgctaaagcccagatggcagcacccctgccccgagcttgaaccatgt 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaacatcaaatatgctaaagccaagatggcagcacccctgccccgagcttgaaccatgt 560
Query: 357 gcaacaaagtatcttcagcagggcccttggtttctgctctctgtccacgctcagcccaca 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gcaacaaagtatcttcagcagggcccttggtttctgctctctgtccacgctccgcccaca 620
Query: 417 cacgctctgcccacacttctgcaggtccctgtcatccaaagaggtcattggatttcactt 476
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacgctccgcccacacttctgcaggtccctgtcatccaaagaggtcattggatttcactt 680
Query: 477 ctggtgaccaagacactgactgatcaaacaagccagagctgcttgctaaacacaggaatg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtgaccaagacactgactgatcaaacaagccagagctgcttgctaaacacaggaatg 740
Query: 537 aactgcccctcccctgtttcttggcca 563
|||||||||||||||||||||||||||
Sbjct: 741 aactgcccctcccctgtttcttggcca 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 967
Length adjustment: 10
Effective length of query: 553
Effective length of database: 957
Effective search space: 529221
Effective search space used: 529221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_n05.g1 MSMg01no063_n05.g1 CHROMAT_FILE:
MSMg01no063_n05.g1 PHD_FILE: MSMg01no063_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:21 2005
(535 letters)
>mm_chr13_57842219_57843153
Length = 935
Score = 1017 bits (526), Expect = 0.0
Identities = 532/534 (99%)
Strand = Plus / Minus
Query: 1 tggcttcctgcaatttaagactctatcctgggcataaatgaaatattcagaaagcagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tggcttcctgcaatttaagactctatcctgggcataaatgaaatattcagaaagcagagg 675
Query: 61 agctagagatgaaacctgcagggggaaaagtttagtttagaataacgtcttaaaattcca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 674 agctagagatgaaacctgcagggggaaaagtttagtttagaataaggtcttaaaattcca 615
Query: 121 gggatttaaagtacaggcttcgttctgtgtgggcctcagctgccgggaccaggttgttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gggatttaaagtacaggcttcgttctgtgtgggcctcagctgccgggaccaggttgttag 555
Query: 181 tgaggagccgtgtacgctgtgagcctggcagttagcctggagtgcagaataaagggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgaggagccgtgtacgctgtgagcctggcagttagcctggagtgcagaataaagggttta 495
Query: 241 atccggaaagttcttcagccttggctctttgagatggagctctgctctggatttgctcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atccggaaagttcttcagccttggctctttgagatggagctctgctctggatttgctcag 435
Query: 301 tcagatgccatctagccttttatgacagttgtagctgaaagaaatgataacattagttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcagatgccatctagccttttatgacagttgtagctgaaagaaatgataacattagttac 375
Query: 361 ccaggaatgaagagcgaaggttccttcctgagaacagaagattggccacagccagccgcc 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccaggaatgaagagcggaggttccttcctgagaacagaagattggccacagccagccgcc 315
Query: 421 agtctactctttctcagaagtctggggcccctgggaccatcagaaatgttgactctcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtctactctttctcagaagtctggggcccctgggaccatcagaaatgttgactctcagc 255
Query: 481 ctctttgtccaccagctggttaacaatctgcatttcagcagagcagccatcttg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctctttgtccaccagctggttaacaatctgcatttcagcagagcagccatcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
