BAC Information

Click to search

BAC

Clone NameMSMg01-064J20
Chromosome13 (Build37)
Map Location 43,814,431 - 43,814,699
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182
Downstream geneLOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J20.T7 (MSMg01no064_j20.b1)MSMg01-064J20.TJ (MSMg01no064_j20.g1)
ACCAG290038AG290039
length732744
length of high quality
(start - end)
323 (9 - 331)295 (79 - 373)
definitionCHROMAT_FILE: MSMg01no064_j20.b1 PHD_FILE: MSMg01no064_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:40 2005CHROMAT_FILE: MSMg01no064_j20.g1 PHD_FILE: MSMg01no064_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTATTGGGAGAGGATCCGCGGAATTCATGAACCCGACTCCTTTCTTT
TTAAAAACAATTTTTTTTTTTTTTTTTTTTGGAGATAGGGTCTCATATCG
TCCAAGCCTCTAACTTGTTATATAGCTGAAAGTGACCTTGAACTTCTGAC
CCTGTGCCTACAAGTCCTGAAATTACTAGTACGTGTGCCGCCACACTGGG
CTTGCGCACTGTGATTATCCGTAGCCTTTGTCACCTCTGTGCTACTGGAT
CTCCGGTCTCAAGTACTCTTTTTTTTTTTCCCCCTGAAACAGGTTTTCTC
TGTATAGCCCTGGCTGTCCTGGAACTCACTTGGTATTTTCCCCCCCCTCC
CACTCAGAAATCCGCCTGCCTTTGACTCCCAAGCGCTGGAATATAAAAAA
AAGACGCCACCCCTGCCCGGCTCAAGTACTCTTATGACCCTCAATTTTCT
TCTTTTATTGAAAATAATTTTTTTCATACAATACATCCTGATTATGGCTC
CCCCCACCCCAACCCTCCCCGTTTCTCCCCAGTTCCCCTCCCTTCCAGAT
TCACTCCCTTTCCGTCTCCCATTACAACGCATATCCCCATTTACGCCCTA
TTACCACCCATTACCCGACTTCAACACTACCCCCATTTTATACAAAACAC
ACTGACCCGACCCCCCCTCGCAAACATCTTTATCCAACCCGATCCCAACG
CTTACTACCTCTCGTACATCTCCTTTCACCCT
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGTTGATTCCTCATGAAAA
TAAATCTTGCAGCTACTTTTCCTCTATTATCTCTTTATAAATAGTATCCA
TAAATTTTCACCTTGGTGCCCTACCATTTCTGTGACTGGCATTGAGGGTG
CAGAGTCAGGATGGAATAGGAAAGCAAAAGATTAAAAAAGAAGGAAGAGA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAGA
AAGAAAGAAAGAAAGGAAAAAGAAAGAGAAAGATAGAAAAAAGAGTGAGA
AAGAAAGAGAGGAAAGAGAGTATATAGTTAGACCCCCCCCCACGAGAGAG
AAAGAAGAAGCTGTGTTTACTCCACAGCTGCACTTCTGAGAAAACTAATT
CTCTTCAAAGAATGTCCCTCTGGTGCTTGGCGCGTGAACCCACGGACCAT
AACTTGCGCTGTTCTGGTTTTCACGGACACCTCCGTCTGCAGCCATTGAC
TCTGTCTGCAGGGCAGGGAGATCATTAATCTCGTATGTTCCCTCACCCTG
AGAAGAGTTTTTCCCTTTGCTGAGAGCTCAAGGCAGATTGTGTCTGTTTC
TACTGACCTCCGAGAGATTTGTCTTGTTTCCCCCTTTAAGCAGGTCATGT
ATATTACTGGAGCGTGTCTGGGCTCATAGGCTCCAGTGGGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j20.g1 MSMg01no064_j20.g1 CHROMAT_FILE:
MSMg01no064_j20.g1 PHD_FILE: MSMg01no064_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:40 2005
         (295 letters)



>mm_chr13_43814231_43814925
          Length = 695

 Score =  426 bits (220), Expect = e-123
 Identities = 265/294 (90%), Gaps = 27/294 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagttgattcctcatgaaaataaatcttgcagctacttttcctctattatctctttat 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagttgattcctcatgaaaatgaatcttgcagctacttttcctctattatctctttat 260

                                                                       
Query: 61  aaatagtatccataaattttcaccttggtgccctaccatttctgtgactggcattgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatagtatccataaattttcaccttggtgccctaccatttctgtgactggcattgaggg 320

                                                                       
Query: 121 tgcagagtcaggatggaataggaaagcaaaagattaaaaaagaaggaagagagaaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagagtcaggatggaataggaaagcaaaagattaaaaaagaaggaagagagaaagaaa 380

                                                                       
Query: 181 gaaagaaagaaagaaagaaagagagagagagagagagaaagaaagaaagaaagaaaggaa 240
           |||||||||||||||||||                 ||||||  ||  ||||||||||||
Sbjct: 381 gaaagaaagaaagaaagaa-----------------gaaaga--ga--gaaagaaaggaa 419

                                                                 
Query: 241 aaagaaagagaaagatagaaaaaagagtgagaaagaa-agagaggaaa-gagag 292
           |||||||||||||||    ||||||||||||||| || |||||||||| |||||
Sbjct: 420 aaagaaagagaaaga----aaaaagagtgagaaaaaagagagaggaaaagagag 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)