BAC Information

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BAC

Clone NameMSMg01-064L24
Chromosome13 (Build37)
Map Location 88,147,134 - 88,147,450
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L24.T7 (MSMg01no064_l24.b1)MSMg01-064L24.TJ (MSMg01no064_l24.g1)
ACCAG290134AG290135
length754755
length of high quality
(start - end)
321 (45 - 365)---
definitionCHROMAT_FILE: MSMg01no064_l24.b1 PHD_FILE: MSMg01no064_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:55 2005CHROMAT_FILE: MSMg01no064_l24.g1 PHD_FILE: MSMg01no064_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCACCATCTTGGATGAAGCTCTGCATGAGGACTTGGATGAGTAC
TGAGGTAACAACCAAGACATAACCCTTCTCCAATATGTAGATGATCTCCT
TGTTACAACAGAAACTAAAGAGGGTGGCCAAAAAAGTACTCAGAACTTCC
TACAGGCTCTGAAGTATATGATGTATCAGGCATCTTCAAATTCTGCAATA
GATACTGACTGCTAGTTGGGTATAATAGGTGTTGGGACACCATACATGAT
CTTGAAGAATTCCTTACCCCATATAGTGCAAAAGGTAGAAGCATCACCCA
GTTTCCACCAGTTTCTATGGTCAACTCTACCCACTCTTTTTCAAGTCCTA
TTCATTCTTTCTAAATTCTTCCCACCTGTCCTGAACTTTGGTGTGGAAAT
AAACAATGTAACCTATAATCTGCCCCAATAAACCTTGCTACATCTTGATC
TAATATCTAGATTATTCAGAAATAAAACAAGGAACATATGGATATAACTA
TTTGCTCATTTTTATTGATACCTTTTCAGAATGGGTAGAAGTCTACCCTA
CAAAGTAGGAGACTGCCAGTGTAGTGGCACACAAGCTTCTGGAAGACATC
ATACCCAGGTATGATTTGCCTACCCTGCTTGGGTCTGACAATGGACCAGC
ATTTACTTCTCAGGTAATTTAAAGTATAGCACAGGTTCTGGTGACCAAAT
GAAN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAAAAAAGGTTCATATATTCCCAA
ATAAAAGTTTTAACCACTTCCCAGGAAAGAATTTTTTTTCCACCAAAAAC
CTTCTGAAAAAAAAAAGAACCAATAAAACCTTAAAGTGGAGGCCCCAGCC
CGGACGGAGGGGCATTCGGAAAAGGCCCACCCGGAGGGCACAAAAACCCG
GCAAAAAAAAAAGTTGAAAGGTTGAATGAAAGCAAAAACGGAAACTTGGC
GGGGAAAGGGGCCTCCAAGAAAGGCCAGGAGCTACTTCCAAAGGGTTCCA
CCCCTTGGACCCCCAAATTTTTTTTTATACCCCCGCCCCACCAGGTAACC
TAAAATAAACTTTAAAAGTCCAAACACCCCAATCCTCAAAAAATAACTAC
GGAAAATTAACCGGGGCCAAAACCAAAAGGGGCAGTTTCCCAAAGGAAGA
CCAGACCACCGGATAATGAAATACTAAACATTCACCCGGAAAACATTCTA
ATAAAAAACACCATCCAGGTAAATCAGGCAAAACTCAAGGTTGGTAAGGG
GGAATGGAAAACCAACGCCCACAGGGGCATTTGCAGGAATACGCGAAAAA
ATAAGGATCGCAAACGGCAAACCATGATTTCGACAGGCACCCGGAGAACC
ACATAACAAAGCTGGCAGGACGGTAAAGATCATAACATGGAATCTATGTA
TGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l24.b1 MSMg01no064_l24.b1 CHROMAT_FILE:
MSMg01no064_l24.b1 PHD_FILE: MSMg01no064_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:55 2005
         (321 letters)



>mm_chr13_88146777_88147497
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccaccatcttggatgaagctctgcatgaggacttggatgagtactgaggtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaattcatccaccatcttggatgaagctctgcatgaggacttggatgagtactgaggtaa 615

                                                                       
Query: 65  caaccaagacataacccttctccaatatgtagatgatctccttgttacaacagaaactaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caaccaagacataacccttctccaatatgtagatgatctccttgttacaacagaaactaa 555

                                                                       
Query: 125 agagggtggccaaaaaagtactcagaacttcctacaggctctgaagtatatgatgtatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agagggtggccaaaaaagtactcagaacttcctacaggctctgaagtatatgatgtatca 495

                                                                       
Query: 185 ggcatcttcaaattctgcaatagatactgactgctagttgggtataataggtgttgggac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 494 ggcatcttcaaattctgcaatagatactgactgctagttgggtataataggtattgggac 435

                                                                       
Query: 245 accatacatgatcttgaagaattccttaccccatatagtgcaaaaggtagaagcatcacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 accatacatgatcttgaagaattccttaccccatatagtgcaaaaggtagaagcatcacc 375

                            
Query: 305 cagtttccaccagtttc 321
           |||||||||||||||||
Sbjct: 374 cagtttccaccagtttc 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)