BAC Information

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BAC

Clone NameMSMg01-064M22
Chromosome13 (Build37)
Map Location 40,408,973 - 40,409,354
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik, Ofcc1
Downstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064M22.T7 (MSMg01no064_m22.b1)MSMg01-064M22.TJ (MSMg01no064_m22.g1)
ACCAG290173AG290174
length1,1911,274
length of high quality
(start - end)
423 (30 - 452)384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no064_m22.b1 PHD_FILE: MSMg01no064_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:03 2005CHROMAT_FILE: MSMg01no064_m22.g1 PHD_FILE: MSMg01no064_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNCCAGCTATGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
TCACCTGAGGAATACCAAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATTATCAGGGAAATGCAAACCCCAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGCCTAAGATCAAAAATCCAGGTGACAGCAGATGC
TGGCAAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTG
CAAGCTTGTACAACCACTCTGGAAATCAGTCTTGCAGTTCCTTAGAAAAT
TGGACATAGTACTACTGGAGGATCCAGCAATACCTCTTCTGGGCATATAT
CCAGAAGATGTCCCAACCGGTATGAAGGACACATGCTTCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCATAAGCTGGAAAGAACCCAGATGCCCCT
TTTTTTTTTCCCCCCCCCCCAAAATGTGGTACATTTACACAAAAAAATGC
TACTCAGCTATTAAAAAGAATGAATTTATAAAATTCCTAGGCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGCGAGGTAACCCAATCACAAAGGAACT
CACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACTTAGGAT
ACCCAAGATATAAGATACAATTTGCCAAATGCATGAAACTCTAGAAGAAT
GAAGACCAAAGTGTGGACACTGTGCCCCTTCTTAGAATTAGGAACAAAAC
ACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGTGACAAAAGGAT
GGACCATCTAGAGACTGCCTTATCTAGGGATCCACCCCATAATCAGCTTC
CAAATGCTGACACCATTGCATACACTAGCAATATTTTGCTGAAAGGACCC
AGATATAGCTGCCTCTTGGGTGACTAAGCCGGGGCCTAACAAAAACCTAA
AGGGAATGCTCACAGCCCGCTATTGGATGGATCCCAGGGCCCCCCATGGA
AGGAACTTTGAGAAAGTTTTCCAGGGGCTTAAAAAGATTTGGCACCCGTT
AGGGGGCACCACCTTTTTTGAATAACCCACTACCCCCCAAAATTCTTGAT
CCTTTGTTCCTTTGTTTTCAAAAAAGGGGCTTTTCTCGCCCTCTCCGGGA
AAGAAAAAGCCCCTTGGGACCACAAATCTTTTATTTTCCCC
NNTTAAAGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGACTCACATAAAACAGGCAAGGAAAA
GGAGAAAATAAAAATGAAAAGACACACCCATCCCAACAGATGCTCAAAAC
ACAAGAAAGAAGCACAAAAAGTAGGAGTAATATCCACGCTGACACTTCCA
TAAGCTCAGAACTCAATTCCAGAACCCAAAGATGGAGAGACAGCTGATAT
GCCAGAGAAGGAGGTAAGAGGTGAAGGAGGTAAGGGCCTAGATAGGAAAG
TTAGGAAGTTGTCTGAAATTGTCTCCCAGTATGGAGGAAACTTTAAAGAT
GTGGAGTATCAACAAGGAAACTGGCATTAACAACAAGTCAAACAGAAATT
TTTTTGAAAAAGAGCCAATCAGTGATGATTAAAGATGATGATGATGATGG
TAGTGTTTTTTTTCCCCCCCCCCNNNNNNNNNNCCCCCCCAAAAAAAAAA
AGGGGGGTNTTTTTTTTTTTTTTTCTNNTTTCTTTCTTTTCTTCTCTTCT
TTCTCTTTCTCTTTTTTCTTCTTCTTTTTCTCCTCTCTTTCTTTTCTTCC
TTTCTTTCTTCTTTTTTCTTTTCTTTCTTTTTTTCTTTCTCTTTTCTTTT
TCTTCTCTCTTTTTTTTTTTCCTTTTCTTTTTTTTTCTCTTTTCCCTTTT
TCTCTTTTCTTTCTTTTTCTTTCTCCTTCTCTTCTCTTTTTTTTTTTCCC
CTTCTTCCTTCTTCCTTCTTTTCCCTTTCTTTTTTTTTTTCCTTTTTTTT
CTTCCTTTTTTTTTTTCTTTTTTTTTCTTTTTTTCCCTTTTTTCTTCTCT
TCTCTCTTCTTTTTCTTTTCTTTTCTTCTTTCCCTTTTTCTTNTTTCTTC
TTCCCTTTNTTTTTTTTTTCTTTTCTTTTCCCTTCTTTCCTCTTTCTTCT
TTCTCTTTCTTTTCCTCTCTCCTTTTCTCCCTCCTNTCCTTCTTTCTCTC
TCTTCTCTCTCTTTTTCTTCTCCTTTCCTTTTTTTTTCTTTTCTTTNTCC
TCTTCTTTCTCTTTTCCTCNTTTTTTTCTCTTCCTCCTTTTCTTCCTCTT
TCTCTTTTCTTTTTCTTCTTCTCTTCTTTCCTTCTTCCTTTCCTCCTTTC
TTCTTTTTCCTTTTCTTCTTNTTTTTTTNTTCCTTTCTTTTCTTTTTTTC
TTTCTTCTTTTTCCTTTTTTCCCTTTTTTTTCTTCCCTCTCTCCTTCCCT
TCTTTTCCCCTCTTCTTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_m22.g1 MSMg01no064_m22.g1 CHROMAT_FILE:
MSMg01no064_m22.g1 PHD_FILE: MSMg01no064_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:03 2005
         (384 letters)



>mm_chr13_40408773_40409554
          Length = 782

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%), Gaps = 2/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagactcacataaaacaggcaaggaaaaggagaaaataaaaatgaaaagacacacccat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 582 aaagactcacataaaacaggcaaggaaaaggagaaaataaaaatgaaaaggcacacctat 523

                                                                       
Query: 61  cccaacagatgctcaaaacacaagaaagaagcacaaaaagtaggagtaatatccacgctg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 522 cccaacagatgctcaaaacacaagaaagaagcac-aaaagtaggagtaatatccacgctg 464

                                                                       
Query: 121 acacttccataagctcagaactcaattccagaacccaaagatggagagacagctgatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 463 acacttccataagctcagaactcaattccagaacccaaagatggagagatagctgatgtg 404

                                                                       
Query: 181 ccagagaaggaggtaagaggtgaaggaggtaagggcctagataggaaagttaggaagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccagagaaggaggtaagaggtgaaggaggtaagggcctagataggaaagttaggaagttg 344

                                                                       
Query: 241 tctgaaattgtctcccagtatggaggaaactttaaagatgtggagtatcaacaaggaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tctgaaattgtctcccagtatggaggaaactttaaagatgtggagtatcaacaaggaaac 284

                                                                       
Query: 301 tggcattaacaacaagtcaaacagaaatttttttgaaaaagagccaatcagtgatgatta 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 283 tggcattaacaacaagtcaaacagaaatttttt-gaaaaagagccaatcagtgatgatta 225

                                   
Query: 361 aagatgatgatgatgatggtagtg 384
           ||||||||||||||||||||||||
Sbjct: 224 aagatgatgatgatgatggtagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 782
Length adjustment: 9
Effective length of query: 375
Effective length of database: 773
Effective search space:   289875
Effective search space used:   289875
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)