BAC Information

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BAC

Clone NameMSMg01-064O14
Chromosome13 (Build37)
Map Location 82,822,556 - 82,822,935
singlet/doubletsinglet
Overlap genenone
Upstream genePolr3g, 2900024O10Rik, Cetn3, LOC238756
Downstream geneLOC667018, Mef2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064O14.T7 (MSMg01no064_o14.b1)MSMg01-064O14.TJ (MSMg01no064_o14.g1)
ACCAG290249AG290250
length1,1811,212
length of high quality
(start - end)
459 (27 - 485)387 (70 - 456)
definitionCHROMAT_FILE: MSMg01no064_o14.b1 PHD_FILE: MSMg01no064_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:13 2005CHROMAT_FILE: MSMg01no064_o14.g1 PHD_FILE: MSMg01no064_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCATGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCA
GTGGCAATTTTGGAGATTCTTTGCTTCATAATACTTTGCCACATTTTTGT
TTGTTTTGTGGTTGCTGTCGTTTTGCCCCCCCAATTTTTACCTTATGAGT
ATTTTGCATATAGATATGAGATAAGCAAACCAAGCCTTAGATGCCATCTT
ATTCAGAGTGGCTATGTTGAAAACTCAAGAGATAGCACATGCTGACAACT
GGGACACCGCTTCATTGCTGGTAGGAATGCAAACTTTTATACACACATAC
ACACACAGAGACACACACACACACACACATTCACACATTATAGTTTCTGG
TTTTGTGTTTTCATGGAATTTCTGACAAGACACGTGTGACAAGACATGTT
CCTCTGCATCTATGTGCTTCCTGGGATTTCCTTTGGATGTTTGTCTTCTG
TTTTTTTGTCCCCCCCCATTCTGGTTAGTTTATATATTAAAAAAATTTAA
ATTATTATTTATTTTAGCTGCTAGTTAGTTTTTGAGGGCAATAAGGAAAA
AGGTTAGATTTGAGGGAACAGGGAATTGAGGAGGATCTGGGAGGAGTTGG
GAGAGTTCTTTTCTTTTTTCTTTTTCTCTTATTCCTTCTTTCTCTTCTCC
TTTTTCTTTCTTTTTCTTTTTTTTTTTTTTCTCTTTCTTTTTTTTCTTCC
TTTTTTTTCCTTTTTTTTTCTTTTTTTCTTCTTTCTTTTTTTCTTTTCTC
TTTTCTCTTTTTTTCTTCTTTTTTTTCCTTTTTTTCCTATTTTTATTTTT
TCTTCTTTCTTCTCTCTTTNTACTCTTTTTCTAAAATTACAACCTTTTAT
TTTTTTCATTTCTTTTTATTCTCTTTTTTATTTCTTTCTTTCTTTTCCTC
TTTTTCTTCTCTTTTAACTTTATTCTTTTTCATTACTCTTTTTATTTATT
TTTTTTTAATTTTATTCTTATATACTTCTTTTATTTGTTCTTTTTTTTTT
TATTTTTCCTTTTTCTCTTTATTTTTCTTATTTTTTTTCTTCTTCTTTTT
TTTTTTTTTATTCCTATATTTTACTTTTATACTGCTTTCTATTTTATTCT
TACTTTCTGTTTTCTATTAACTTATTCTATTATTATATTCTCTTTATCTT
TATTTTTTATATCTTTCTTCTTATTCTTTTT
NNNGGACGAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTAGGCAAATGGATGGAACTAGAAAATATC
ATCCAAGCCCAAAAGGACATTTATGGTATCCCCCCCTTACTCAATAGTAG
GCATTAGCCAAAAACTTCAGAATATCCATGATATAACAGACTTCAGGAAG
CTTTATAAGAGGCCCAAGTGTGGATACCTGAAACCCACATAGAAGGGGAA
CAAAATAATAATGAGAAGCAGAGGGAGGGAGAAAACTGGGTGGGAGAGAA
GAGAGGAGGGGCAGGATCAGGTATAGGATGAGGGAAAAAAAGATGTCCAG
AAGGCCAGGAGAATGAATAACAATATTCAGCAGTGAGGGTTAAGGAACAG
AATGAACCTCTAGAAAGTCCCAGAGACCTGGAAAGTGAGAGGCTACCAGG
ACTCTTTTTTTTCCCCCCCCCCCCAAAATGCCCCTCCCCCACAAAAAAAA
AGAAGAGATCTTCTTCTGCAGAGAGACATAGCACAAAACTACCACCTAGC
TTCAACATTTTTAACCGAGAATTGTTCCTGTCTAAAGGAAATTCAGGGAC
AAAAATGGAGCAGAGACTGAAAGAAAGGTTATGCAGTGACTGGTCCCACT
TGGGATCAATCTGATACATGCAAACCAAACCCTTGACACTATTTACTGAA
GCCATATTGTTCGTGAAAACAGGAGTCTGGCATGGCTGTCCTTGTAGAAT
CTCTCCCAGTAACTGACTGAGACCGATGCAAATATTTATAGTTCACCATT
GAATTGAACGCCGGGTATAATACATAAGTTATAAAAAGGTCTGATAGTAG
TGATAGATAATTGCACTCCTTATTCGTAATATTTTTGTTTCNTATCTAGT
TTCCTCCAGTATTTCTTTATATTATGCTTAAACTCTGTTCATTGCTTTTC
TGGTTTTGTGTCCTCACCTCTTATTCTCTATATTTATTCCTTTTCTTCTT
CTTTCTCAAATTCCTTCTTTACTTCTTTGTTATTTTCATCTTCCTCTTCT
TAATCTTTCTTCTCCTTTCTTCTTTTCTCTCTTACTTTATCCCTCTCTTC
TTTTGATCTCTTCTCTTCTCTCTTTCTTTCTCTCTTATTTTTTACTTGTT
CTTTACTTTCTTTCCTATTCTTTCATCTCCCTTTTTTTTTTCCCATTCTC
TTCTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_o14.b1 MSMg01no064_o14.b1 CHROMAT_FILE:
MSMg01no064_o14.b1 PHD_FILE: MSMg01no064_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:13 2005
         (459 letters)



>mm_chr13_82822077_82822935
          Length = 859

 Score =  636 bits (329), Expect = 0.0
 Identities = 368/393 (93%), Gaps = 23/393 (5%)
 Strand = Plus / Minus

                                                                       
Query: 77  gttttgtggttgctgtcgttttg-----cccccccaatttttaccttatgagtattttgc 131
           |||||||||||||||||||||||           ||||||||||||||||||||||||||
Sbjct: 859 gttttgtggttgctgtcgttttggtttt------caatttttaccttatgagtattttgc 806

                                                                       
Query: 132 atatagatatgagataagcaaaccaagccttagatgccatcttattcagagtggctatgt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atatagatatgagataagcaaaccaagccttagatgccatcttattcagagtggctatgt 746

                                                                       
Query: 192 tgaaaactcaagagatagcacatgctgacaactgggacaccgcttcattgctggtaggaa 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaaaactcaagagatagcacatgctgacaactgggacaccgcttcattgctggtaggaa 686

                                                                       
Query: 252 tgcaaacttttatacacacatacacacacagagacacacacacacacacacattcacaca 311
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 685 tgcaaacttttatacacacatacacacacagag--acacacacacacacacattcacaca 628

                                                                       
Query: 312 ttatagtttctggttttgtgttttcatggaatttctgacaagacacgtgtgacaagacat 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttatagtttctggttttgtgttttcatggaatttctgacaagacacgtgtgacaagacat 568

                                                                       
Query: 372 gttcctctgcatctatgtgcttcctgggatttcctttggatgtttgtcttctgttt---- 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 567 gttcctctgcatctatgtgcttcctgggatttcctttggatgtttgtcttctgtttgtct 508

                                            
Query: 428 -ttttgtccccccccattctggttagtttatat 459
            |||| |     || ||||||||||||||||||
Sbjct: 507 gttttat-----cctattctggttagtttatat 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)