BAC Information

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BAC

Clone NameMSMg01-065J16
Chromosome13 (Build37)
Map Location 20,052,962 - 20,053,389
singlet/doubletsinglet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
Downstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065J16.T7 (MSMg01no065_j16.b1)MSMg01-065J16.TJ (MSMg01no065_j16.g1)
ACCAG290774AG290775
length725685
length of high quality
(start - end)
248 (67 - 314)431 (71 - 501)
definitionCHROMAT_FILE: MSMg01no065_j16.b1 PHD_FILE: MSMg01no065_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:10 2005CHROMAT_FILE: MSMg01no065_j16.g1 PHD_FILE: MSMg01no065_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAGACCGCGGAATT
CAATGAATATGCCGGACAACATACCGAAACTTATGGAAAACAGTAAAAGC
ATTGCTAAGGGGAACGTTCATAGCACTAAGCACCTTCATAAAGAAATTGG
AGAGATCTCATACTAGCAACTTAGCAGAGCATCTAAAAGCTCTAGAGCAA
AAAGAACATACCCAAAAGAAGGAGATAACAGAAAACAATCAAACTCAGGG
TTAAAATAAACACTGTATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGCGTGTCCCTCTTTTTCCTTCCTCTGCCGGGTTC
CTCTTTGCTGTTTGCTCTGCTCCATGCCGGTTTTTTTTTTTCAGCTCACT
TTTTTTTTCCCCTTTCCCTCCCCTTTTTCCTCGCCAGTTCCTCTTTTTAC
CACTTCCCCGTATTATCAGTTGGTCCACGGCGTATGATTGAGTGAAAGAG
GTGGTGCGGCCGCTGAGGAGTGTACTATCCCCCGTCAACTTCCCCCAATA
CCATATACACACTACTTTCTTTATTTTCTTAACTGAGCAATTTCCTTTGC
TTATCCTCTCTTGAACCTCTTTTTTTATTTCCAAACAAATTATATTTGAT
CTTTTTACCGCATACGTTTGCGGTCCCGTTGGTTCTTCTTGTGTGCAGTG
TTACTGTCGTGTAGGATTAAATATG
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCATTAGTGCCCTGTATCACCATCATTAA
GATGTATTATTATTTAGCTTATGTATATCCTTTTTTATTTCATTAAATAT
TCTTCTTGTATTTACTCTTTGGAACTCATTGCTGAGTTTTGTTCTTATTT
ACTCTCCTTGCAATCTATTACAGAGAAATTTATATTATATTATTTCTTAC
ATTTCTTATAGTTCTATATTGGAACTTGTACATCTCAAGTTATTCCTTTT
GTTGGATCAATTTTCTATCAGCTATATTCTTTCATGTGAAGTATTTGTAC
TATTCAAGTTGAACTAGATGGTTGTAGGGTTGAGCTATTGTTCCTCGTTT
ATGCACTAGAACTATGGCTTATTAGCTAAACCCTTAGTCTTCCTGCTTAG
GCACAAACCATGACTACTACTTCCACTTCAAATGTGTAATAGCTGTAAAA
GGAGCCGCAATTGTGGGACAGACCTACTATACAAATACCATGCTAATTAG
TTGAAAAAAATCTCCGTTTTAACCTTAATGACTATAGGATATAAAGGAAC
CAGCAGAGTATGGGGTAAATTAAGAATTTTGTCTTTAAAGTTAGGTATGT
AAGGAAAATAGGTTATAGAATGGGATTACTATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_j16.g1 MSMg01no065_j16.g1 CHROMAT_FILE:
MSMg01no065_j16.g1 PHD_FILE: MSMg01no065_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:10 2005
         (431 letters)



>mm_chr13_20052762_20053589
          Length = 828

 Score =  725 bits (375), Expect = 0.0
 Identities = 417/431 (96%), Gaps = 3/431 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcattagtgccctgtatcaccatcattaagatgtattattatttagcttatgtatatcc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 628 ttcattagtgctctgtatcaccatcattaagatgtattattatttagtttatgtatatcc 569

                                                                       
Query: 61  ttttttatttcattaaatattcttcttgtatttactctttggaactcattgctgagtttt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 568 ttttttatttcattaaatattcttcttgtatttactctttggaattcattgctgagtttt 509

                                                                       
Query: 121 gttcttatttactctccttgcaatctattacagagaaatttatattatattatttcttac 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 508 gttcttatttactctccttgcaatc-attacagagaaatttatattatattatttcttac 450

                                                                       
Query: 181 atttcttatagttctatattggaacttgtacatctcaagttattccttttgttggatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| 
Sbjct: 449 atttcttatagttctatattggaacttgtacatctcaagttatacc-tttgttggatcag 391

                                                                       
Query: 241 ttttctatcagctatattctttcatgtgaagtatttgtactattcaagttgaactagatg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttttctatcagctatactctttcatgtgaagtatttgtactattcaagttgaactagatg 331

                                                                       
Query: 301 gttgtagggttgagctattgttcctcgtttatgcactagaactatggcttattagctaaa 360
           | |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 330 gctgta-ggttgagctgttgttcctcgtttatgcactagaactatggcttaatagctaaa 272

                                                                       
Query: 361 cccttagtcttcctgcttaggcacaaaccatgactactacttccacttcaaatgtgtaat 420
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 271 cccttagtcttcctgcttaggcacaaaccatgaatactacttccacttcaaatgtgcaat 212

                      
Query: 421 agctgtaaaag 431
           |||||||||||
Sbjct: 211 agctgtaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 828
Length adjustment: 9
Effective length of query: 422
Effective length of database: 819
Effective search space:   345618
Effective search space used:   345618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)