BAC Information

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BAC

Clone NameMSMg01-066M08
Chromosome13 (Build37)
Map Location 111,205,881 - 111,205,979
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066M08.T7 (MSMg01no066_m08.b1)MSMg01-066M08.TJ (MSMg01no066_m08.g1)
ACCAG291665AG291666
length709731
length of high quality
(start - end)
101 (74 - 174)69 (126 - 194)
definitionCHROMAT_FILE: MSMg01no066_m08.b1 PHD_FILE: MSMg01no066_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:40 2005CHROMAT_FILE: MSMg01no066_m08.g1 PHD_FILE: MSMg01no066_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCGTACGGAGCCGCNGGAA
TTCTCCATTATTCCCTGAAAAAATTATAATTCTTTGGTTTTTCCATAATT
ATGTCCCTAACTCACGTCCGATTAAATATAAATAAAATGTGGTTTAATTT
CTTCTCTATAGAACTATATCTTTCAATGGTAATTATATACAGTTTTGAAT
AAATTATAACTTTTCATCCTGAAATGCTAGAACTACTATTCAGAAAAATA
GCAGGACTTGTTTAACATATATTGAGACTTAATATCAGTAAATACAATCC
AGTGGTTTCAGGCAACCTTATTTTTTTCTGAATTGCTTACAAATCAATCC
GTAACAACTTGATTAACACGATTCTGATCACCTCCGTGTATGCCTATGAA
GTCTTTCCAAAACACACATGAGCCAGTATCATCATAGATAGCGAGCTAAT
TTGGTCCATAACATACTCACTTACTTGTGCATATAATCCAAATGTATATT
ATCATATTCATGAGTATACATGATAACCACCTTCATTATTATTCCTTTAC
GACTAAAATGGATGCCGATTACAATGAAATCTTCTGTTGTACCTTTCCCA
ACTAAGGTTCATTTCTCTCCTCTAATAGTTCCTGTCCCCTATTCACACAT
TGGGAAAGGCATTTTCATGCCCTCAAACGTTTAACTACAAAAAAATCTCC
CAATTCTTC
CGATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTATCCCGCCGAAAATCCACTTTAGTCTCATAAGGGACTA
AAGAAATTACAAAGAATATAGACAGCAAAACCTTTAAAACACAATGACCC
TTCTCAAACATTTAGTTTAGTTTATACAAGCTTATTCTATATACATAAAA
TAGAGAGCCAATATGTTTTTCTTTTTTCCCAACCAAATGACTGAGTATCA
TTTATACACTGTGCCCTCATTTTTTACACCACACATTTATCCCTTCAGGA
GAAATCATAACAATAGGAGGAATGATAATAGATCTTTATAAAGATCTGGA
ATAATATGAACTCTTTCATATTAGAGAAGTTGCTTAATCTTCATAAACTC
TATTAATCTTCCTCTCTAGTTGGTAATGGTGTACTGTAAAGTTCTTACAA
TTTATTCGTATCGTGGCCCTCATACCAACTTATTTGAGGTCTTATTCATG
TATACTAACTATTATCTGGACTCCTAGCATTGATTAGATTTGGGCTTTTT
CTATTTTCTTTTTGTTAGGGCTCCCGCTTTTAAAGTTGCCCCATACTGGT
CTTGACTTTTATATCTCGAGCGATCTTTTCCTTTTTTGTGTAACCCCGGG
TTCACAGAAACTTTTTTCTTTCGCCCAACCTTTTTTTCACTTGAATGTGA
CTCTACCTCACCACAATCATTGGATTTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_m08.b1 MSMg01no066_m08.b1 CHROMAT_FILE:
MSMg01no066_m08.b1 PHD_FILE: MSMg01no066_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:40 2005
         (101 letters)



>mm_chr13_111205681_111206179
          Length = 499

 Score =  180 bits (93), Expect = 2e-50
 Identities = 99/101 (98%), Gaps = 2/101 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttataattctttggtttttccataattatgtccctaactcacgtccgattaaatataaat 60
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 299 ttataatt-tttggtttttccataattatgtccctaactca-gtccgattaaatataaat 242

                                                    
Query: 61  aaaatgtggtttaatttcttctctatagaactatatctttc 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaatgtggtttaatttcttctctatagaactatatctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 499
Length adjustment: 8
Effective length of query: 93
Effective length of database: 491
Effective search space:    45663
Effective search space used:    45663
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)