BAC Information

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BAC

Clone NameMSMg01-067P12
Chromosome13 (Build37)
Map Location 35,470,668 - 35,470,793
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P12.T7 (MSMg01no067_p12.b1)MSMg01-067P12.TJ (MSMg01no067_p12.g1)
ACCAG292576AG292577
length704706
length of high quality
(start - end)
309 (34 - 342)36 (128 - 163)
definitionCHROMAT_FILE: MSMg01no067_p12.b1 PHD_FILE: MSMg01no067_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:14 2005CHROMAT_FILE: MSMg01no067_p12.g1 PHD_FILE: MSMg01no067_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTAAACGACTCCTATAGTGAGAGGATCCGCGGAATTCTTAGAC
ATGTGCGTTGAGCTATAGGTAGGGGATGTTGATATTAAGTTGGTACCTTA
GTCATCACATACCCAGAGAAAAATATGGAGACAAAAATAACCGAGAATCA
ACATCCTTGAATCTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCAT
TTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCAC
TCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTG
GGGCATATTAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGTC
TATTATTTCACCTCCCGCCACCCATGCAGCTAGAGTCAAGAGCTCCGGGG
TACTGCCCACCTCATAAAGAAAATACACCTATTGGGTTGCTGATCCCTCT
AGCTCCTTGTCTACTTTCTCTAGCTCCTCCATTGTCAGCCCTACGATCTA
TCCATCAAATGACCGAGATTACCCACCTTCGGTGTTTGTCTAGTTCCTGA
TTATCTTCTTCTTATTTACCGTTACATTCGGGCTTCTTTTAACCCTTCTC
TTTCTATGTTCCTGCATATGTTTTCTTTCCTTTCTCTCCGCTTTCACATT
TTCATATCTCTATTTTCTCCCTACCGTTCTCCCTCTCGCTTTATTTCTTC
TTTG
CACAACGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTTCTGTGTGCTGACTCTCACGA
ATATTTCCCACAAATTTCTCCTCAGTGATGCTGATCTCTTCTTAATCTCA
GCTAATTCTTCAGCGCCTGCTGATCAGCATCCATTGTTCCACCAAATCAT
AAATTTACTTTAGTGGTTCGTTGTTTAGCTCTGAGCCCCCTTTTCTAGTG
TGTTTATTTGATTTTCTGGAGTTCTCTTTCTCATAATATCCTCGATACCT
GATACCTTTTGTTATTTTTTTGATACTCATGAAGAATATTCTCCAAATTA
TGGACATTTTTGTTTCTCCCCCACCCCCGCCACCTATCCTTTCTTGTAAT
TCAGTTTTTTATTTTCTCCCCCCATAATAAAAATGAATTGTTGGAGCTTG
TGATAGATTGCCTTATTCTTTGTATTTATTTTATTTGTTTCTACATTTAT
GATGACTCTTTTGATATATAATTACCTGTATTTCTCTTTAAGCACCTCTT
TTCTATCTTGTTATTTTTTTATGCAATTAATTCTCTTTTGCTTTACATTA
TAATTGTATATCCAAAATTTTATAAATCGTAATTAGACATTGTTGTTCAA
CCAATATTCTTTGTATTATAATATGCTCTATTGCCTGCCCATTCTTATCA
TCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p12.b1 MSMg01no067_p12.b1 CHROMAT_FILE:
MSMg01no067_p12.b1 PHD_FILE: MSMg01no067_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:14 2005
         (309 letters)



>mm_chr13_35470464_35471171
          Length = 708

 Score =  199 bits (103), Expect = 1e-55
 Identities = 121/129 (93%), Gaps = 5/129 (3%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttagacatgtgcgttgagctataggtaggggatgttgatattaagttggtacct 65
           ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 330 gaattcttagacatgggggttgagctataggtaggggatgttgacattaagttggtacct 271

                                                                       
Query: 66  tagtcatcacata--cccagagaaaaatatggagacaaaaataaccgagaatcaacatcc 123
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tagtcatcacatagg---agagaaaaatatggagacaaaaataaccgagaatcaacatcc 214

                    
Query: 124 ttgaatctt 132
           |||||||||
Sbjct: 213 ttgaatctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space:   209700
Effective search space used:   209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)