BAC Information

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BAC

Clone NameMSMg01-068B02
Chromosome13 (Build37)
Map Location 5,255,255 - 5,255,568
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068B02.T7 (MSMg01no068_b02.b1)MSMg01-068B02.TJ (MSMg01no068_b02.g1)
ACCAG292650AG292651
length680678
length of high quality
(start - end)
319 (59 - 377)503 (87 - 589)
definitionCHROMAT_FILE: MSMg01no068_b02.b1 PHD_FILE: MSMg01no068_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:22 2005CHROMAT_FILE: MSMg01no068_b02.g1 PHD_FILE: MSMg01no068_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTTATANATTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCACAAATTGCACACCTAAGAAAGCCTGTGATG
GAATTGAGTGCCATGAGTCCAAAACTCATTGAGTTTGTCATCTTATTACT
AATAAGGAGTCACTGATGAAAACACTTTGAAGAATTATTGGGGTATTTAG
GAAGTTAGTTTACTCTATCTTGAATGGCTGTGTCAAGGTGACAGGTTATA
CTCTGACCCATTGGTAACACCAGCCTGGTACCTTGCACTGCCTAGGATTA
TGTGGCCATGAAGACTGGGGACTTGTGAACAAAATGTCTGCCTTGTGCCC
AGGCTGAAGTTTGTTGAATAACATGATTCTTTTGTCTACACATACACAAC
AGCCACGACTGTTATCATAGCTGAGCTCCTTTTCTTTGTGCCAGTTATTG
CAACATATTAGCATCTACATGAGACCCTAATGTTGTCAGTGTAGTGGGAT
GTACCAGCCATTGTACTAATGCGCTTTCCCTGTCTAATTGCACTGCTCCC
CAAGCTTTCACGGATGGAATACTAGATAACTCTGCTTCATAAACTGCACT
CGTAATAACTTGAATTATGGACTGATTAATGACCTAAATACATATAATCA
AGGGACATGATAACTTTGTCAACTGTAAAC
ATAGTATANATAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATA
CCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCA
GGGAAATGCAAATCGAAATAACCCTGAGATTCCACCTCACACCAGTCAGA
ATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAAC
CACTCTGGAAATCAGTCTGGCGGTTCCTCTGAAAACTGGACATAGTACTA
CCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCC
AATAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCAGAACCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGG
ATACAGAAAATGTGGTACATGTACACAATGGAGTACTACTCAGCTATTAA
AAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAT
CATCCTGAGTGAGGTAACACATTCTCAAAGAAACTCACACAATATGTATT
CACTGAAAAGTGGATATTAGCCCCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_b02.b1 MSMg01no068_b02.b1 CHROMAT_FILE:
MSMg01no068_b02.b1 PHD_FILE: MSMg01no068_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:22 2005
         (319 letters)



>mm_chr13_5255051_5255768
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaaattgcacacctaagaaagcctgtgatggaattgagtgccatgagtccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaaattgcacacctaagaaagcctgtgatggaattgagtgccatgagtccaa 264

                                                                       
Query: 65  aactcattgagtttgtcatcttattactaataaggagtcactgatgaaaacactttgaag 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactcattgagtttgt-atcttattactaataaggagtcactgatgaaaacactttgaag 323

                                                                       
Query: 125 aattattggggtatttaggaagttagtttactctatcttgaatggctgtgtcaaggtgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattattggggtatttaggaagttagtttactctatcttgaatggctgtgtcaaggtgac 383

                                                                       
Query: 185 aggttatactctgacccattggtaacaccagcctggtaccttgcactgcctaggattatg 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 aggttatactctgacccattggtaacaccagcctggcaccttgcactgcctaggattatg 443

                                                                       
Query: 245 tggccatgaagactggggacttgtgaacaaaatgtctgccttgtgcccaggctgaagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggccatgaagactggggacttgtgaacaaaatgtctgccttgtgcccaggctgaagttt 503

                          
Query: 305 gttgaataacatgat 319
           |||||||||||||||
Sbjct: 504 gttgaataacatgat 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)