Query= MSMg01no068_g02.b1 MSMg01no068_g02.b1 CHROMAT_FILE:
MSMg01no068_g02.b1 PHD_FILE: MSMg01no068_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:48 2005
(313 letters)
>mm_chr13_11768710_11769422
Length = 713
Score = 520 bits (269), Expect = e-152
Identities = 278/281 (98%)
Strand = Plus / Plus
Query: 23 gcacctgcttattatcatggacatgtcttacaaacagaaatatataattctttgggcata 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gcacctgcttattatcatggacatgtcttacaaacagaaatatataattctttgggcata 282
Query: 83 agtgttacgataagttttaatgcccctttctcagataaacagtctcttctatactaaact 142
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aatgttacgataagttttagtgcccctttctcagataaacagtctcttctatactaaact 342
Query: 143 gtgctccttatataaataccaagcatcctctggatttagacttcatgaattagaaactga 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtgctccttatataaataccaagcatcctctggatttagacttcatgaattagaaactga 402
Query: 203 atctggactgattatctgaagatcagtcagaggcaatggcagaggtgataaccagaaggt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atctggactgattatctgaagatcagtcagaggcaatggcagaggtgataaccagaaggt 462
Query: 263 atcttaatgatgaccgggttgttgagtgtctttatcgtcct 303
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 463 atcttaatgatgacccggttgttgagtgtctttatcgtcct 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_g02.g1 MSMg01no068_g02.g1 CHROMAT_FILE:
MSMg01no068_g02.g1 PHD_FILE: MSMg01no068_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:48 2005
(262 letters)
>mm_chr13_11916639_11917301
Length = 663
Score = 493 bits (255), Expect = e-144
Identities = 261/263 (99%), Gaps = 1/263 (0%)
Strand = Plus / Minus
Query: 1 tcccaagttatctgaagaat-acttcttgtttcttgggcaaacatgactcttcttgtcct 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcccaagttatctgaagaataacttcttgtttcttgggcaaacatgactcttcttgtcct 314
Query: 60 ttgattaaatggtcttcgttttctttacaatgaactgatgatgttaagttagacttctct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgattaaatggtcttcgttttctttacaatgaactgatgatgttaagttagacttctct 254
Query: 120 caaaaaaatcaagctgtctccttttcttccccttttggcctgagcataattaatttcttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caaaaaaatcaagctgtctccttttcttccccttttggcctgagcataattaatttcttt 194
Query: 180 cctttgagacagagtcttactctctaacacagaccatccttgaacttgtagttatccccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cctttgagacagagtcttactctctaacacagaccatccttgaacttgtagttatccccc 134
Query: 240 tgcctctgattcctgagtgctgg 262
||||||||| |||||||||||||
Sbjct: 133 tgcctctgactcctgagtgctgg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 663
Length adjustment: 9
Effective length of query: 253
Effective length of database: 654
Effective search space: 165462
Effective search space used: 165462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
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