BAC Information

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BAC

Clone NameMSMg01-068I17
Chromosome13 (Build37)
Map Location 64,206,097 - 64,320,767
singlet/doubletdoublet
Overlap geneSlc35d2, Zfp367, Habp4, Cdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I17.T7 (MSMg01no068_i17.b1)MSMg01-068I17.TJ (MSMg01no068_i17.g1)
ACCAG293014AG293015
length702703
length of high quality
(start - end)
318 (44 - 361)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no068_i17.b1 PHD_FILE: MSMg01no068_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:00 2005CHROMAT_FILE: MSMg01no068_i17.g1 PHD_FILE: MSMg01no068_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,206,097 - 64,206,409)(64,320,483 - 64,320,767)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGGCCTGTGATGACAAAGAAAAGATCCATCGTGCGGTTAGTGACA
GTTCAGCTTAAATCCAGTTAGCACAACCTTACCACCTTTTGTGCCATTGA
TGCATTGACAATAATTACACAGTTCTATCAAAGAGACAATGCATTAAATA
TCAATAACTAGTTAAACAGGGGCTTATTGTACTACTTTCCAAACCTTTAC
GTTTGAAAGTTTCCATCATAAAAAGGTTTTGCTGTTACTTATTGAGTAGC
CTTCTGATTCCCTATGTGCATCGTGTCATGAGTACATCTGTGATGGCTTG
TACATGCTTGTTTTATTTAACCCCCACCACCCTGCAGGTGTGGCCTTGTT
GGAGTAGGTGTGTCACCATAAGTGTATAAGAAACTTATCCTAGCTGCCTG
GAAGCCAGTCTTCTGCTGGCAGCCTTCTGATGAAGATGTATAACTTTCAG
CTCCTCCTGCACCATTTCTGCCTGGATGCTGCCATGTTCCTGCCTGGATG
ATAATGGACCGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGT
CCTTATAAAAGTTGCCTTGGTCACTAACTAATGCAACATCCTTATACACA
CACCACATTCACATACTTATACTCTTCCTTTTTTATTACTCACTCTATCT
CT
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTGCCCATATACTTTTCAATC
TGTTATCCTACCTAAAGAAATAAGGAGAAAAATATTAAGCAATATGACAA
GGTGCTTCAGAGGTTAATGGAATTTGAATACCCCAAGCCCACAAAAATAT
TAGGTGGGTATGATGTCCTGCCTATCTATCAGTCATATTTGGGCTCAGCT
GAATGATCCTGCCTCAATATAGGAGGTGGAAAGAGAAAACAACTTATGTT
AGCCTTGGGCTTCCACATGCTTATACCACACATGTGCACCCAACATACAT
ACATACATGCATGTTTTTTTTTTGCACCCCCCCCCCACAATAAAATAAGA
TTGTACAGTAAGGAATAGCACACCTTTAACTCTTAAATCCGCATTTGTGA
TTCTTAGTGGTAGTTTCTAAGAATGATCAGGTACATCTTTATAAAGCTTA
GTTTAAGTTCTGTTTTTAGTGTTGGTGACCTTCCTATTGTGATGTGGATA
TAGGTTTGAAGTCCACAGGGTGCACTGCTAAGGTATACTTGGTTGTTATA
GCCCAATTGTACTATCTATTTAAAGCAATTAAAGCTAAGCAGAAATAGCC
AGGCATGGTGGGCAACATCTCTAGTTCGGACTACCCCGAAAAGATAGAAC
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i17.b1 MSMg01no068_i17.b1 CHROMAT_FILE:
MSMg01no068_i17.b1 PHD_FILE: MSMg01no068_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:00 2005
         (318 letters)



>mm_chr13_64205893_64206610
          Length = 718

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtggcctgtgatgacaaagaaaagatccatcgtgcggttagtgacagttcagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtggcctgtgatgacaaagaaaagatccatcgtgcggttagtgacagttcagc 264

                                                                       
Query: 65  ttaaatccagttagcacaaccttaccaccttttgtgccattgatgcattgacaataatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaaatccagttagcacaaccttaccaccttttgtgccattgatgcattgacaataatta 324

                                                                       
Query: 125 cacagttctatcaaagagacaatgcattaaatatcaataactagttaaacaggggcttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagttctatcaaagagacaatgcattaaatatcaataactagttaaacaggggcttat 384

                                                                       
Query: 185 tgtactactttccaaacctttacgtttgaaagtttccatcataaaaaggttttgctgtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtactactttccaaacctttacgtttgaaagtttccatcataaaaaggttttgctgtta 444

                                                                       
Query: 245 cttattgagtagccttctgattccctatgtgcatcgtgtcatgagtacatctgtgatggc 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 cttattgagtagccttctgattccctatgtgcagcgtgtcatgagtacatctgtgatggc 504

                        
Query: 305 ttgtacatgcttg 317
           |||||||||||||
Sbjct: 505 ttgtacatgcttg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_i17.g1 MSMg01no068_i17.g1 CHROMAT_FILE:
MSMg01no068_i17.g1 PHD_FILE: MSMg01no068_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:00 2005
         (285 letters)



>mm_chr13_64320283_64320967
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttgcccatatacttttcaatctgttatcctacctaaagaaataaggagaaaaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatttgcccatatacttttcaatctgttatcctacctaaagaaataaggagaaaaatatt 426

                                                                       
Query: 61  aagcaatatgacaaggtgcttcagaggttaatggaatttgaataccccaagcccacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aagcaatatgacaaggtgcttcagaggttaatggaatttgaataccccaagcccacaaaa 366

                                                                       
Query: 121 atattaggtgggtatgatgtcctgcctatctatcagtcatatttgggctcagctgaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atattaggtgggtatgatgtcctgcctatctatcagtcatatttgggctcagctgaatga 306

                                                                       
Query: 181 tcctgcctcaatataggaggtggaaagagaaaacaacttatgttagccttgggcttccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcctgcctcaatataggaggtggaaagagaaaacaacttatgttagccttgggcttccac 246

                                                        
Query: 241 atgcttataccacacatgtgcacccaacatacatacatacatgca 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgcttataccacacatgtgcacccaacatacatacatacatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)