BAC Information

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BAC

Clone NameMSMg01-068K04
Chromosome13 (Build37)
Map Location 22,155,710 - 22,156,257
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj
Downstream geneLOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068K04.T7 (MSMg01no068_k04.b1)MSMg01-068K04.TJ (MSMg01no068_k04.g1)
ACCAG293083AG293084
length701702
length of high quality
(start - end)
589 (44 - 632)470 (74 - 543)
definitionCHROMAT_FILE: MSMg01no068_k04.b1 PHD_FILE: MSMg01no068_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:07 2005CHROMAT_FILE: MSMg01no068_k04.g1 PHD_FILE: MSMg01no068_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTACTGTTCTACCCAGCTGTTTGTTTAGTATTATTTGAGGGTACCTC
CCTTAAATTCAGCCCAATATTGTGTCCAAGGAGTTCTAATCTTACAATTA
TTTGAGGCTCCAGAGCCTAGTATGGATGCACTTACCTGCCTCTGATGCCA
TCTGTCGTTTGAATAGTATCGTGCATCAATCTGAAAACAAAGCTTCTCAT
CTGAAACTGTTGGCTGTAGTGTTCCAAAAGCGATTTGCAGCTCAGAGGTG
GGGTGCTTATCTCAAATGTGTGAAGCCTGAGAGTGAACCCCTAGGGCTGC
CAAAAAGAAAGAAACTAAAAAAGCATGTACAGTAATTCTTACCCCTCTCC
TCTGACAGTCTTCATTTTTATTCCATGTAATGAAAAAGTAACTTGTTATA
TATTTCAAGTTAATAATAAATCTGACTCTGGGCTATAGATAGATGGTAAG
ACAAGAGAGGTTAAAAAAAATAGTAACTCCTAGAAAGGCAAAAAATAAAA
TAAAATCCAAGATAACATTTGATTAGTACATAGGGGCATTGAGGTATATG
GAATGACAAAAGATTCATTCTATAGTCCAGCTGTTTTACTTAAAATGGAT
GTGTTAGTTTAAGCTCACAAACCTCATTTACTTGAAAGATGTACGCTTGG
G
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGCCCCAATTTAGCAGGAAGCAATT
AAGAGTCCTTAAATTGGGATGAATGGTTTTGGTCGTTTGATGTTAGTTAT
GGTTATCTAGGATAGTAGGTTGTTTTGTTTAATTGATAGAAATTTAAGGT
TTGCTTAATTATTGTATACTGATAGAAATTTAAGCTTGTTTTGTTTGAAT
TATTGTATATTGATAGAAATGTAAAGTTGTTTGGTTAGACTATTGTCTGA
CTATCCTGTACATAAGCTATTTGTTTAAGGCATGATGTAAAGCTCTAGTT
TTAGGGTTCTTATACTTGTTTCTATTGTGTGTAGATTGTTAATGTTAGAA
AAAAGATTTTTTTTAAAAAACAGAAAGGGGAATATGAAGTGGGAATTTCT
GGTTTCCTTGGAGATTCAGTTGTGTCATGTGATGTTTTTCTGGAGACTGC
CTTATTAGAGGATGTTTTGCTGAGTGGTGTTTTTCTGGAAGCTGCCTGGA
AAAGGGGCATGTAATGTTTTGCTGGAGTAGAGGCTTGACAGGATATGTGA
TGTCTGATAAGGGCATAAGTATAACTCCACAGACAGTGGACGACGCTGCT
TGGCCTTCCTTGCGCTTTTGCTGATGCTGGTCCTCCCTGACAATGCTGTT
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_k04.b1 MSMg01no068_k04.b1 CHROMAT_FILE:
MSMg01no068_k04.b1 PHD_FILE: MSMg01no068_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:07 2005
         (589 letters)



>mm_chr13_22155269_22156257
          Length = 989

 Score =  951 bits (492), Expect = 0.0
 Identities = 528/548 (96%), Gaps = 13/548 (2%)
 Strand = Plus / Minus

                                                                       
Query: 53  acctcccttaaattcagcccaatattgtgtccaaggagttctaatcttacaattatttga 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 989 acctcccttaaattcagcccaatattgtgtccaaggagttctaatcttacacttatttga 930

                                                                       
Query: 113 ggctccagagcctagtatggatgcacttacctgcctctgatgccatctgtcgtttgaata 172
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 929 ggctccagagcctggtatggatgcacttacctgcctctgatgccatgtgtcgtttgaatg 870

                                                                       
Query: 173 gtatcgtgcatcaatctgaaaacaaagcttctcatctgaaactgttggctgtagtgttcc 232
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 869 gtatcgtgcatcaatctgaaaacaaggcttctcatctgaaactgtttgctgtagtgttcc 810

                                                                       
Query: 233 aaaagcgat-------------ttgcagctcagaggtggggtgcttatctcaaatgtgtg 279
           ||||| |||             ||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aaaagtgatttggagagcaggattgcagctcagaggtggggtgcttatctcaaatgtgtg 750

                                                                       
Query: 280 aagcctgagagtgaacccctagggctgccaaaaagaaagaaactaaaaaagcatgtacag 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aagcctgagagtgaacccctagggctgccaaaaagaaagaaactaaaaaagcatgtacag 690

                                                                       
Query: 340 taattcttacccctctcctctgacagtcttcatttttattccatgtaatgaaaaagtaac 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 taattcttacccctctcctctgacagtcttcatttttattccatgtaatgaaaaagtaac 630

                                                                       
Query: 400 ttgttatatatttcaagttaataataaatctgactctgggctatagatagatggtaagac 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttgttatatatttcaagttaataataaatctgactctgggctatagatagatggtaagac 570

                                                                       
Query: 460 aagagaggttaaaaaaaatagtaactcctagaaaggcaaaaaataaaataaaatccaaga 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagagaggttaaaaaaaatagtaactcctagaaaggcaaaaaataaaataaaatccaaga 510

                                                                       
Query: 520 taacatttgattagtacataggggcattgaggtatatggaatgacaaaagattcattcta 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taacatttgattagtacataggggcattgaggtatatggaatgacaaaagattcattcta 450

                   
Query: 580 tagtccag 587
           ||||||||
Sbjct: 449 tagtccag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)