BAC Information

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BAC

Clone NameMSMg01-068L12
Chromosome13 (Build37)
Map Location 35,459,321 - 35,459,502
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068L12.T7 (MSMg01no068_l12.b1)MSMg01-068L12.TJ (MSMg01no068_l12.g1)
ACCAG293147AG293148
length757771
length of high quality
(start - end)
212 (45 - 256)185 (75 - 259)
definitionCHROMAT_FILE: MSMg01no068_l12.b1 PHD_FILE: MSMg01no068_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:14 2005CHROMAT_FILE: MSMg01no068_l12.g1 PHD_FILE: MSMg01no068_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGCCTGATACTATCAACACCTAACTATCCATGACTTGTGAGGTCA
TGGACCCCAAAGGAAAGCCTATCACTCTCCCTTTCCTAAACCAGTATAAT
TTCAAATTGCATTCTAAATATTTAATCCTTATACCCACAGGTAAGTGTAG
CTGTCACCTTTTATACATATCTACAACATGAACAACTGAACCTGAGCTGC
CCATCTGCAGTTGATTATTTAAGACCAAATCTGTACACCTAAAGCTCAGA
GAACATCTCACAAGATAGAGTGGATTTATTGTAAGAGCCAGAATACCAGT
ATGTCTGCTGCAATAGAGTGATTTTCCCACCCCCCCACCAACATACACCT
ATGAAATCTCCATAATATCGCCCCTATTTAAAAAAAAAAAAAAGTTTTGG
CGGGGTGGCATACCTTTGTTCTATATCCTATATCTCACATAGCTCCTTCT
CTTATACGAATTAGTTTACGTATATTAATTTGTTTGTCTCTATATATTAC
TTATATTTAGCATCTACCCATAGAATATAAATTAGATGATAGTACCATAT
AAATTCCTAACATCTTCATTCTTTACACATATTCCACATGCATTCATAAA
TAAGACGCCCTTATATTGATCGTTTTACTCCTCAGCTATTCTCTATCTTT
AGGTCTGTTATTATTCTTGTTAATTTTCTCTGTATTATTTCCACTTCTTT
TCTCTTT
CAATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGTCAGGTAGAACTGGGCTGAATC
CTATGGAGTTGTTGCAGTGGGATCCCCGGGAAAACTGGGAAACTGACTAT
TTAAGTCTGTTTGATCCCACTTTGTGACACTTGCATGCCCTGTCCATGTG
TACTGGGGACCACAGTAGTCATGCCTGAATCTTTTGCTGGGTTATATCTC
TTCTGGTAGCATAAGGGATATGGCTCCTATATCTCCCTCCTATAGGTGGT
AGGTAGTTGGTAGGTTACTCCTCTTTTTTTATCTCTTCCTATTCAACAAA
TCATTTTATCCTTTTTTTTTTTTCCCCCCCTCCCCCTCTTCTTATTATTC
TTTTTTTTCATTTTCTCTCCACCTTTTTTAATTATAAATAAAATTTCCCT
TCTTCTAGGCCTTTTCATTTATTTTTTATTTCTCATTTCCTATCTCTCCT
CCCTCTCTTGCCTCTTTTACCTTTTCTTTCTCCCCCTCTTTTTTTCTTTC
TACTACCATCATTCAATCATTACTTTTTTTCTTCTTATTTATAAAATTTC
TTCTACCATTGTCATTTTATCATTACCCCTTCAATTCTCTTTTATCTTCA
CATTTCTCTTCTAATATCCTTTCTTCCATTTCTCTTCTTTCCTCTTCTTC
TTCTTTTTCCTTATTCCCCCTTCTATATCTCATTCCCTCATCATTCCCCC
CTTTTTTCTTCCATTCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_l12.g1 MSMg01no068_l12.g1 CHROMAT_FILE:
MSMg01no068_l12.g1 PHD_FILE: MSMg01no068_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:15 2005
         (185 letters)



>mm_chr13_35459121_35459705
          Length = 585

 Score =  313 bits (162), Expect = 3e-90
 Identities = 177/182 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtcaggtagaactgggctgaatcctatggagttgttgcagtgggatccccgggaaaa 60
           |||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||
Sbjct: 382 tgggtcaggtagaactgggctgcatcctatggagttgttgcagtgggatccaagggaaaa 323

                                                                       
Query: 61  ctgggaaactgactatttaagtctgtttgatcccactttgtgacacttgcatgccctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgggaaactgactatttaagtctgtttgatcccactttgtgacacttgcatgccctgtc 263

                                                                       
Query: 121 catgtgtactggggaccacagtagtcatgcctgaatcttttgctgggttatatctcttct 180
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 262 catgtgtactagggaccacagtagtcatgcctgaatcctttgctgggttatatctcttct 203

             
Query: 181 gg 182
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)