BAC Information

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BAC

Clone NameMSMg01-068N21
Chromosome13 (Build37)
Map Location 46,295,130 - 46,458,433
singlet/doubletdoublet
Overlap geneGm1574
Upstream geneLOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
Downstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N21.T7 (MSMg01no068_n21.b1)MSMg01-068N21.TJ (MSMg01no068_n21.g1)
ACCAG293261AG293262
length711720
length of high quality
(start - end)
395 (70 - 464)354 (73 - 426)
definitionCHROMAT_FILE: MSMg01no068_n21.b1 PHD_FILE: MSMg01no068_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:27 2005CHROMAT_FILE: MSMg01no068_n21.g1 PHD_FILE: MSMg01no068_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,295,130 - 46,295,524)(46,458,082 - 46,458,433)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAAGCGGAATTCCCCAC
TGCTCACTTGCCAAATTGTAATCATTACTAGAGCCAAGTGTGCTAATAAC
ATTAATAAATCCAACCCCCAAAATCGAATTTAATTGACTTGGAATAATTG
CAAAGAGTACCAGTCATATAGTAAAAGGGAAAGTGCTTACTGGGAACTCT
TTCTGTGGCTGTACTCTAGCAAGAATTGCTTCCTTCCCTTACAGAAGGTA
CTTTCAGTTTCTGATTATACGTGTATCTATGTGTGCATGTGCATCTAAGT
GAAGGTGCCTGTGCAGGCCAGAAGAGGGTGTCAGATCTCCAGGAGCTGAA
ATTATGGATGCTATGAACTGCACAACCTTGATTGCTGGGAGCTGAACCCA
GGTCCTCTGTGTGAGACTCGTGCACTCATAGATCTTGAATCTTCTAATTC
CCGAGCCTCAGTTCCTTCTAAGACGACACTACAAGAGTTGTTCACTACCA
TACTTCAAGGTGTTCAAGTTCTCCCAAAGTCTGATCTCTTTCAAACCAAA
AAAGATCAAAATCTCAGTCCCCTGTATGGCTTTTCCCTAATAGTTTAAGA
GCTGTACCTGCTTTAAAAGGCATGTAACATAACCACGCCTGACTGCCCTG
TCATCTCTTTAGTTATACCATGATTCCATTTTGGCTGTGAGGACTATGAT
TAACCTATATT
CGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGACCTCAACTGAGGCAGGGATTCCCTAGCAAGCC
ACCAATCGGAGTAATAAAGAGGAATAATTGTTCTCATCACTGGGACAAAG
ACTTTAGCTAGTCAGCATCAAGTGGAGGAGGAATGATTGCCCAAAGATTA
GAGGGATGGTAGAGAACAACAGACCCTCATCCCAGTGTCTCGCTCCTTCA
TTCCGACTCCACAGTGGCTGGACTTCACCATCAAAAGGCCTCTCTGCTTT
GTTGCTTTTCCCATGAAAGGTCATAAGTCTCCCACAGTTTAGTGTAAACG
AAGAGTAAAACTTAGGGTGCTAAGGGAACACTGACTGACTAGATTGTATA
GGAGGGGCAGAATAAAACTGAGGCGGAACATTTCCAAGAAAGTGGGGTGG
CATCAAAGCTCTACTGTGTTTTGCTTACCTCTGTGATCCTGATCTCTATG
GCTAGGGTAGACAGTAGAAGCCAATTATGCCAAAGAGCAGAGAAAGGAGA
TGGATTCAACATATCCACATTAGGAATAAGAACAAAGGGGCCCAAGGACC
CCCACGTTCCTTCTACAGGGGCTTTGACATTCAGGGTTTAAGGTTTAACT
AGAGGGATAGGGAACAATTTACTTAAGTCGGTCCTGGTCAAATGGGCGGT
TCTAGCTCACTACCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n21.b1 MSMg01no068_n21.b1 CHROMAT_FILE:
MSMg01no068_n21.b1 PHD_FILE: MSMg01no068_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:27 2005
         (395 letters)



>mm_chr13_46294930_46295724
          Length = 795

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcattactagagccaagtgtgctaataacattaataaatccaacccccaaaatcgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcattactagagccaagtgtgctaataacattaataaatccaacccccaaaatcgaat 260

                                                                       
Query: 61  ttaattgacttggaataattgcaaagagtaccagtcatatagtaaaagggaaagtgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaattgacttggaataattgcaaagagtaccagtcatatagtaaaagggaaagtgctta 320

                                                                       
Query: 121 ctgggaactctttctgtggctgtactctagcaagaattgcttccttcccttacagaaggt 180
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 321 ctgggaactctttctgtggctgtactctagcaagatttgcttccttcccttacagatggt 380

                                                                       
Query: 181 actttcagtttctgattatacgtgtatctatgtgtgcatgtgcatctaagtgaaggtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttcagtttctgattatacgtgtatctatgtgtgcatgtgcatctaagtgaaggtgcc 440

                                                                       
Query: 241 tgtgcaggccagaagagggtgtcagatctccaggagctgaaattatggatgctatgaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tgtgcaggccagaagagggtgtcagatctccaggagctgaaattatggatgctgtgaact 500

                                                                       
Query: 301 gcacaaccttgattgctgggagctgaacccaggtcctctgtgtgagactcgtgcactcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacaaccttgattgctgggagctgaacccaggtcctctgtgtgagactcgtgcactcat 560

                                              
Query: 361 agatcttgaatcttctaattcccgagcctcagttc 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 agatcttgaatcttctaattcccgagcctcagttc 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_n21.g1 MSMg01no068_n21.g1 CHROMAT_FILE:
MSMg01no068_n21.g1 PHD_FILE: MSMg01no068_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:27 2005
         (354 letters)



>mm_chr13_46457882_46458635
          Length = 754

 Score =  665 bits (344), Expect = 0.0
 Identities = 350/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgaggcagggattccctagcaagccaccaatcggagtaataaagaggaataattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aactgaggcagggattccctagcaagccaccaatcggagtaataaagaggaataattgtt 493

                                                                       
Query: 61  ctcatcactgggacaaagactttagctagtcagcatcaagtggaggaggaatgattgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctcatcactgggacaaagactttagctagtcagcatcaagtggaggaggaatgattgccc 433

                                                                       
Query: 121 aaagattagagggatggtagagaacaacagaccctcatcccagtgtctcgctccttcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaagattagagggatggtagagaacaacagaccctcatcccagtgtctcgctccttcatt 373

                                                                       
Query: 181 ccgactccacagtggctggacttcaccatcaaaaggcctctctgctttgttgcttttccc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cggactccacagtggctggacttcaccatcaaaaggcctctctgctttgttgcttttccc 313

                                                                       
Query: 241 atgaaaggtcataagtctcccacagtttagtgtaaacgaagagtaaaacttagggtgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgaaaggtcataagtctcccacagtttagtgtaaacgaagagtaaaacttagggtgcta 253

                                                               
Query: 301 agggaacactgactgactagattgtataggaggggcagaataaaactgaggc 352
           |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 agggaacactgactgactagattggataggaggggcagaataaaactgaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)