BAC Information

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BAC

Clone NameMSMg01-068O01
Chromosome13 (Build37)
Map Location 44,406,871 - 44,407,071
singlet/doubletsinglet
Overlap genenone
Upstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
Downstream geneEG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068O01.T7 (MSMg01no068_o01.b1)MSMg01-068O01.TJ (MSMg01no068_o01.g1)
ACCAG293269AG293270
length718842
length of high quality
(start - end)
285 (24 - 308)200 (142 - 341)
definitionCHROMAT_FILE: MSMg01no068_o01.b1 PHD_FILE: MSMg01no068_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:27 2005CHROMAT_FILE: MSMg01no068_o01.g1 PHD_FILE: MSMg01no068_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCTTAC
TACTTGAAAGCCCCTCGCCCTCTGAGGTTATATAAAGCGATTAAAAACTG
CTGAGGACGGAGACTCAACCTGTACTGCTGCCTCCAAGTCACGCAGAGAG
TCCCAGGGGTGGGGGGCAGCCTCCATGAGCCATTACCAAGGCTGGGTAAT
GGGGTGGGCTTTGCAGTGGTATAGCTGTCTTTAACTCCTCTGTCCACGTT
TCTGTAATTCCTCACCCATACACCTTTAGATCACCAAGCTGGAAAAAGTC
ACACACCACCTGTCTTCAGGGGCACTGGCAGATAACGCCCTCTCATTTTC
CTTTTGTTTTTCCGCCCCGCCCCCCAACTACTGACAGTGTTTCTAATGGT
ACTTTGGAGCCCACGAAAGAAAAACAAAACATCTCAGGGGCTCCCTATTT
AACCACCATTTGGAAGCCACTTGTCTACCCACTACCTGTATACTACCGAT
GTCCTATATGATCAGGCGTTCCTATTTTCTTGTTGCCCTTGTCTACTAAT
TTACTGGTCTTCCCCGCTGTTTTATATGTTAGCCTGTTTTCTAATCGTCC
CTATTTGGATCCTCCCTAAGCCCCCGTTTTTATATACCCTCCCTCGATTT
TTTATTGCCGCTGGTTCTTTTATCGCATCCCCTCCCCTTTCATTTTTTTG
CACTCCTCTTTTGCTCCG
CCCCCCCTCGCCCCCNCCCTCCCCCCTTTCGCTTCTCTTTTCTTCNNAAA
NGGTTTNNTNNGGCGCAATGATATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCTTGG
TTTTCACCATTACAGTGATAACTTTACCATTGGTCTTAGCTGTGATTTCT
AAAATGGAAGGTTAGCAGACACTGAATGGTAAAGTTCAGTTGTTTCCTTT
TTTTAAAGCTTCTCTGTCCAGCAGGGAAAACATGACTGCATTTATGGGTG
TTTGAAGTATCAAGGCTACAGGGTAAGACAGACTGAATGAGCGGCTTCCT
GTTGGACTGCGTGTAGCTGCTAAGTGAGCTACACAACTATTTCTTTCTTG
CGAGGCAATTCACAATAAGCCGCGGATTTTTTTTTTCCCCCCCCCCCCCA
TGAATTGTTAAACTTATGTTATTTGACGTTTTGTCCGTCTCTAAAAAAGA
AAAACCTTCTCCGGTAGCTTTCCGTGAATTTATCCTATCTTTTCCCCTTT
TAAGATAGCCACCATCTATCTACACCGTTTTTGCCTTATAACTAATATAT
TATTCCCTCTTTCCTGGCCGAAAAAATTCTATCTTTCTGTTTTTTCCATA
TTCCCCCTTTTTCCGCCCCTTTTTTTTTTGCTTTACATCTATTCTTCCCA
CTTTAATTCTTTCCTTCTTTCTTTATTCTTTTCGTCGCTTCTCCGCAATA
TAATTGTTATCGTCAGTAAATTATACCTTTTACTCCTTTCCCCGCCTATT
TTTTTTCTCCTTCCTTCTCCCTATTTGCCTATCTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_o01.g1 MSMg01no068_o01.g1 CHROMAT_FILE:
MSMg01no068_o01.g1 PHD_FILE: MSMg01no068_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:28 2005
         (200 letters)



>mm_chr13_44406671_44407271
          Length = 601

 Score =  366 bits (189), Expect = e-106
 Identities = 198/201 (98%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcttggttttcaccattacagtgataactttaccattggtcttagctgtgatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aactcttggttttcaccattacagtgataactttaccattggtcttagctgtgatttcta 342

                                                                       
Query: 61  aaatggaaggttagcagacactgaatggtaaagttcagttgtttccttttttt-aaagct 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 341 aaatggaaggttagcagacactgaatgggaaagttcagttgtttccttttttttaaagct 282

                                                                       
Query: 120 tctctgtccagcagggaaaacatgactgcatttatgggtgtttgaagtatcaaggctaca 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 281 tctctgtccagcagggaaaacatgactgcatttatgggtgtttgacgtatcaaggctaca 222

                                
Query: 180 gggtaagacagactgaatgag 200
           |||||||||||||||||||||
Sbjct: 221 gggtaagacagactgaatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 601
Length adjustment: 8
Effective length of query: 192
Effective length of database: 593
Effective search space:   113856
Effective search space used:   113856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)