BAC Information

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BAC

Clone NameMSMg01-068P06
Chromosome13 (Build37)
Map Location 94,096,384 - 94,096,616
singlet/doubletsinglet
Overlap geneHomer1
Upstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163
Downstream geneJmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P06.T7 (MSMg01no068_p06.b1)MSMg01-068P06.TJ (MSMg01no068_p06.g1)
ACCAG293327AG293328
length709710
length of high quality
(start - end)
322 (49 - 370)235 (133 - 367)
definitionCHROMAT_FILE: MSMg01no068_p06.b1 PHD_FILE: MSMg01no068_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:33 2005CHROMAT_FILE: MSMg01no068_p06.g1 PHD_FILE: MSMg01no068_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTATGCCAGTGTGTAAGTATGTACATGTGAGTGCACTTGC
CTAAGGAGCTCAGAAGTTGGTTACCCCTCAAGGTGGGGTTCTGGGCAATT
GTGCCATCCAACATGGGTACTGGGAAATGAATTTGGGTTCTGTGCAAGAG
TAATATGCTGAACCACTTCTCTAAACTTCCCCAGCATGATTTTTTTTTTT
AAAGACTTTTTCTTTAACTCATGCCTTATTTAGGATTAACTTGGTTTATA
TCTAAGTATTTACAAGATCTGGTAGTCCTTCTGCTAATGATTTCTAATTT
AATTTTATTAGAGTTTGATATTATATCTGACACCCTTTCTAATCTTAAAT
TTGTCATGTTTGTATGACACACATGTCTGACTAGTTGAATGTGTGAGCTT
GAGAATGCCGAATGTGTTCTGCTGCAGTTACCAGCGTGTTTGGTAGATAG
ATAGATGTGGTTATATCCAGCCGATGGATGTACTGTTGGTTCATGATTTC
TTATTGAGGGGTCTTGGGGTCTCCTCTTTAACAGTAATATTCCTATGTCT
CTCTCCTGCTGGCTGCTTTTGCCCTGAATTTTGGTGCTCCATTTGCTCTT
GCTCTACTTATAAGGATTTTTTTTCCTTATTTTATGTTCTTTTGTTTTTG
ATAACTTCC
NTTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTACAGAAAATTTTTATTT
TATTTTTTAAGCCAATACTACTTTACACCACAGTTGAAAGAGTGCTGAGT
TTGGGTATAGCTCAAAGTCATCTTCAGTAACCCTGAACCATGGCAAATTA
CTCGTGGTTACATGCATGATAGAAGTTTACAGGTGCAGTCTTAAACAAGT
CCCCAGAGATAGCTGCCATGCTGTCATGAATTCAATGGCTGTCACATCCA
AAACCCATTTTATAGCAGCTCTTTCCAATTTAGTAGGCTCTTCACATTCT
TTCCAGTCCTCGTCTGTCTTGTTCTCCTGACCCTCCCAGGGTTCAGCACT
CAACAGTCACTCGTTCTTGGCACTTTGACCAGATACTCTTACTTCAATAG
CTATGCTGTTCCCTGCCCCTCCCTAGAAAAAGAATCTGTGGGCTATATTA
CTTACCTTTCATCGCATATGTCCCCACTGATGCAACAGTCTTTTGACTAG
TGTATTGTGTGTATTTTGGTGCTCGTGCAAATATTTAAACTCCCAATTCT
ATTTTTCTCACTTTTTAATTATCTCTCTCTCTTATTTATATCTTTCCTCT
TTTTTCTCCATCTTTTCTCCATCTTCTTTTATCTCATTTCCCTCATTTCT
TTTAACTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p06.g1 MSMg01no068_p06.g1 CHROMAT_FILE:
MSMg01no068_p06.g1 PHD_FILE: MSMg01no068_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:33 2005
         (235 letters)



>mm_chr13_94096184_94096818
          Length = 635

 Score =  429 bits (222), Expect = e-125
 Identities = 231/236 (97%), Gaps = 5/236 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgaaagagtgctgagtttgggtatagctcaaagtcatcttcagtaaccctgaaccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgaaagagtgctgagtttgggtatagctcaaagtcatcttcagtaaccctgaaccatg 260

                                                                       
Query: 61  gcaaattactcgtggttacatgcatgatagaagtttacaggtgcagtcttaaacaagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaattactcgtggttacatgcatgatagaagtttacaggtgcagtcttaaacaagtcc 320

                                                                       
Query: 121 ccagagatagctgccatgctgtcatgaattcaatggctgtcacatccaaaacccatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagagatagctgccatgctgtcatgaattcaatggctgtcacatccaaaacccatttta 380

                                                                   
Query: 181 tagcagctctttccaattt--agtaggctcttcacattctttccagtcctcgtctg 234
           ||||||||||||||||     |||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcagctctttccaa---ccagtaggctcttcacattctttccagtcctcgtctg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)