Query= MSMg01no068_p11.b1 MSMg01no068_p11.b1 CHROMAT_FILE:
MSMg01no068_p11.b1 PHD_FILE: MSMg01no068_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:34 2005
(266 letters)
>mm_chr13_17673441_17674105
Length = 665
Score = 474 bits (245), Expect = e-138
Identities = 257/261 (98%), Gaps = 1/261 (0%)
Strand = Plus / Minus
Query: 6 gaattctgtgaggtgtcacacgaattacagagagtgtgagtgcctgttactgctgggatt 65
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaattctgtaaggtgtcaca-gagttacagagagtgtgagtgcctgttactgctgggatt 407
Query: 66 taaggtttctggtgaaggagagaagggcaagggcaaggcactattcagaagaaacgtaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 406 taaggtttctggtgaaggagagaagggcaagggcaaggcactattcagaagaaacataaa 347
Query: 126 gtaagggaaaccaggagcatacttttaggatctcaactgcaaggtttactatgtagtcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtaagggaaaccaggagcatacttttaggatctcaactgcaaggtttactatgtagtcag 287
Query: 186 tgttcacagaagccacaagatggcgagcttgtccctcatagtgaaagtaagtggaagggc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgttcacagaagccacaagatggcgagcttgtccctcatagtgaaagtaagtggaagggc 227
Query: 246 aagggacagaaggagagggag 266
|||||||||||||||||||||
Sbjct: 226 aagggacagaaggagagggag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 665
Length adjustment: 9
Effective length of query: 257
Effective length of database: 656
Effective search space: 168592
Effective search space used: 168592
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no068_p11.g1 MSMg01no068_p11.g1 CHROMAT_FILE:
MSMg01no068_p11.g1 PHD_FILE: MSMg01no068_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:34 2005
(530 letters)
>mm_chr13_17508264_17509193
Length = 930
Score = 1002 bits (518), Expect = 0.0
Identities = 527/530 (99%)
Strand = Plus / Plus
Query: 1 tatgctgaattccctacccttaagccccttaccccataaaaacccctagcttttgagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgctgaattccctacccttaagccccttaccccataaaaacccctagcttttgagcct 260
Query: 61 catggttgaatccactgtctcctgcatgagctatgtttcaacccggagctccatcattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggttgaatccactgtctcctgcatgagctatgtttcaacccggagctccatcattaa 320
Query: 121 actgcctcatgtgtttacagaacgagggattcttgtgtttcttttggtgctctctcactc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgcctcatgtgtttacagaaggagggattcttgtgtttcttttggtgctctctcactc 380
Query: 181 ccgagactagagtgggggtgcctgaaagggggtcttacactggaatgacaagcatgtacc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ccgagactagagtgggggtgcctgaaagggggtattacactggaatgacaagcatgtacc 440
Query: 241 attgggatgtcattagtgtctataattctttcctaaaattaaggcagtatgattcctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgggatgtcattagtgtctataattctttcctaaaattaaggcagtatgattcctttt 500
Query: 301 aattatgggagatgcaatacaagaaggtgaggtttgttgcctaagaataattgctaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattatgggagatgcaatacaagaaggtgaggtttgttgcctaagaataattgctaaaaa 560
Query: 361 ttgtgtcaaaatatatgagttaggaaactaaatatcactccttaaggagtcctgaccttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgtcaaaatatatgagttaggaaactaaatatcactccttaaggagtcctgaccttg 620
Query: 421 aaatgcagccattcacagagcatttaactatgttatcaggtcctccactatagctactca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgcagccattcacagagcatttaactatgttatcaggtcctccactatagctactca 680
Query: 481 tttcattcaaatcttactgttatcataagatattaatatacgtttctcca 530
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcatttaaatcttactgttatcataagatattaatatacgtttctcca 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
