BAC Information

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BAC

Clone NameMSMg01-069C02
Chromosome13 (Build37)
Map Location 65,408,186 - 65,408,577
singlet/doubletsinglet
Overlap genenone
Upstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369
Downstream geneLOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069C02.T7 (MSMg01no069_c02.b1)MSMg01-069C02.TJ (MSMg01no069_c02.g1)
ACCAG293462AG293463
length695686
length of high quality
(start - end)
391 (53 - 443)288 (58 - 345)
definitionCHROMAT_FILE: MSMg01no069_c02.b1 PHD_FILE: MSMg01no069_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:47 2005CHROMAT_FILE: MSMg01no069_c02.g1 PHD_FILE: MSMg01no069_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATCCGCGGAT
TCAGTCTTGGTTCCCTATAAGCCAGCCAACCACTAAGGGAGGGGGAAGGT
CAGCATGGGTGACCAATGGCCAATCAGTGCCTTCAACAAAGACCCTGTGC
CTGTGGACATAAGCAGGTGGGGTCCAATTGACCCGGTGTTTTCCCAACTT
GGAAAGTCAAGATAACAGATATCTAGGGTTTTGAAGAGATTCTAAGGGCT
TCTGTTGGGAGGAAAGGGTGAGTCCCGTTAGATCCACCTTCTCAACCATT
AGGCCCAGCTGGCAAGGAAGATAGAGTTCTAAGGCATAGTTGGGAGTTCT
ATAAGGACCTTAGTTTGCTTCCTATTGCTGCGATAAAACAATACCAAAAG
CAAATTGCGGAGGAAAAGGGTTGTTTCAGCTTATATATCCATCTTGAGCA
TAGTCCATCTTTGATGGAAAGCCTAGGTAGGGCACGAATAGAAATAGGCC
ATGGAAGAATGTTGCTTACTGGTTTGCTCCTCGTGACTTGCTTTGCCGCT
TTCTTATACAACTCAAAACCACTTATTCACTGATGCAACTTGTCCCCGTG
GGCTGGGCTTCTCCCATATCAACCATTTACCTTGAAAAATTTCCTTAAAG
GTTTGCCTTTAATCCTACCTTGAAGGCACCTTCTTAAGTGTACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGGTAAATCTACTGAGCAAGTTCCAGGACAGCCAAGCTTAGG
CAGTGAACTTGTTGAAAATTTGAAAGCTGGTGATCATGTAATAGAAAGGC
CATGGTTCAGCCCCAGCAAGTAGCTTTGTCCCTGTGGCCATGGCTTTAGA
GGCAAGCGTAGAAGGGACTACTGAGACGATTGATGTTGGTTAGCTGTAGA
TAAAAAATTAGGGGTGATGAAGAAGAAACCAGCATCACTGAAGTGGAACC
TTCTGGTAAGTGTTTTCTGGAAGGACAAAGATGCTGTGTTCCAGAGATGT
TTTTAAGTTGCACCTCGCGATGCTTCTGGACTTGGTCATGTGTGAGAACT
ACCCAGCTGGTGTCAATATCAAAGGTATGAAGGGGTCATGTAGAGCAGTT
AACACATGGCACAATGAAGAGAGTATTTGATAGGAAAGTTTTGAAACCCC
TGTTACAGCTGGAAAACCCAGCCTTATGAAGGTGTAAGTCCTATGCATTG
TCCATAATTTATAGCAACAGTATTCCATCGTACTACATCCGTCCCAACTT
TGCTTTACATTAAAGAGCTGGACATCTTTGCCCTTTTCCTTTTGTTGTTG
GCTCTTTATCTTGCTTACATCTCTAATATTGCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_c02.b1 MSMg01no069_c02.b1 CHROMAT_FILE:
MSMg01no069_c02.b1 PHD_FILE: MSMg01no069_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:47 2005
         (391 letters)



>mm_chr13_65407986_65408777
          Length = 792

 Score =  704 bits (364), Expect = 0.0
 Identities = 385/392 (98%), Gaps = 1/392 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcttggttcc-ctataagccagccaaccactaagggagggggaaggtcagcatgggtg 59
           ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttggaaccactataagccagccaaccactaagggagggggaaggtcagcatgggtg 260

                                                                       
Query: 60  accaatggccaatcagtgccttcaacaaagaccctgtgcctgtggacataagcaggtggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaatggccaatcagtgccttcaacaaagaccctgtgcctgtggacataagcaggtggg 320

                                                                       
Query: 120 gtccaattgacccggtgttttcccaacttggaaagtcaagataacagatatctagggttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccaattgacccggtgttttcccaacttggaaagtcaagataacagatatctagggttt 380

                                                                       
Query: 180 tgaagagattctaagggcttctgttgggaggaaagggtgagtcccgttagatccaccttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagagattctaagggcttctgttgggaggaaagggtgagtcccgttagatccaccttc 440

                                                                       
Query: 240 tcaaccattaggcccagctggcaaggaagatagagttctaaggcatagttgggagttcta 299
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 441 tcaaccattaggcccagctggcaaggaagagagagttctaaggcagagttgggagttcta 500

                                                                       
Query: 300 taaggaccttagtttgcttcctattgctgcgataaaacaataccaaaagcaaattgcgga 359
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 501 taaggaccttagtttgcttcctattgctgtgataaaacaataccaaaagcaaattgggga 560

                                           
Query: 360 ggaaaagggttgtttcagcttatatatccatc 391
           ||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaaagggttgtttcagcttatatatccatc 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 792
Length adjustment: 9
Effective length of query: 382
Effective length of database: 783
Effective search space:   299106
Effective search space used:   299106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)