BAC Information

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BAC

Clone NameMSMg01-069D03
Chromosome13 (Build37)
Map Location 93,194,999 - 93,195,356
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf2, Msh3, Dhfr
Downstream gene6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D03.T7 (MSMg01no069_d03.b1)MSMg01-069D03.TJ (MSMg01no069_d03.g1)
ACCAG293511AG293512
length680697
length of high quality
(start - end)
358 (77 - 434)336 (83 - 418)
definitionCHROMAT_FILE: MSMg01no069_d03.b1 PHD_FILE: MSMg01no069_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:52 2005CHROMAT_FILE: MSMg01no069_d03.g1 PHD_FILE: MSMg01no069_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCCATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCC
GCGGAATTCAAGGCCTTCCTGGGCAAATACTTGCCTAAAATCAAGCTAGT
CTGTAGTTTTTCCATCCCCAAAGGGGAAGATAATAGACCCTTAGGCAGAC
TTCCTCTGCTTAAATAAAATTCCTGTGAAATGGTTCCTTATAAACATTTG
TCACATATTCTCAGGACATGTTGCACCAGAAGCAGGCTCTAAGAAGGTGG
ACTACCTGGGGTGGGTCACCCTTTGTTCACACACCTTTGTCGAGTCCCAG
AAAGGAGAGAGCAAACTTTTATGAAGGCATGGGTCTTTTCTCCATCTCTT
TTTAACAGTTTTATTAGTATATACACAGCATGCATATTAAAAGATGTGGA
CCACAAGACTAATGATTTGTGTACAAACTGAAGCCAATAACAGAACGTAT
TACCAGCAACCCCAAAGGTCCCCTTATGTCTGCACCCTGTGAGGACTGGT
GGCTCTGCCAGTACAGAATGGTTTTGCTGCTTGTGCGTTTTCTAACATCA
CTGGAAATATATCTCGCTGCCTGGGTTCCCCCCCCCTCATCACACTCTTT
CTTTGCCACACTTCACACAACATGTTGCGTCTGAATGTGCTTTCCTTTTT
TCCTTTCGTCCTTTGTGACCGCGCGTCTTT
TTTTCGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCCTAACTTTCTTTG
GTGATGAACAGCAGTATGGAAGTGTAAGCTAAATAAACCCTTTCCTCCCC
AACTTACTTCTTGGTCATGATGTTTTGTGAAGGAATAGAAACCTTGACTA
AGACAGTACCCAAGGAGCTGAAGGGGTCTGAAGCCCCATAGGAGGAACAT
CAATATGAACTAACCAGTACCCCCAGAGCTCCTTGGAACTAAACCACCAA
TCAAAGAAAACATATGGTAGAATTTGTGTCTCTAGCTGTATGTGTAACAG
AGAATGGTCTAGTCGGTCATCACTGGGAGGAGAGGCCCTAGGTCCTGTGA
AGGTTATATGCCCCAGTATAGGGCAATGCCATGACCATATATGGTAGTGG
GTGGCTTGGTTAGCATCGGGTAGGGGCAAGCCCTTTTATTACTCCCTTTC
CCTATTCCTCTACTTTTTTCATCTCTTCTCGCTTTTTTTTCACCCCCTTT
TTTTTTTTTTTTTTCCCCCCTCCCCTCCCCCCCTTGTCTTTCCCCCTCCT
TTTTTTTTCCCTCTTGTTTCTTTCTACACCATATTACATCACATTCTCAT
CCATTTCTTTCCCCTTTTTCCCTCTTTTCTTCCTTTCTCTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d03.b1 MSMg01no069_d03.b1 CHROMAT_FILE:
MSMg01no069_d03.b1 PHD_FILE: MSMg01no069_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:52 2005
         (358 letters)



>mm_chr13_93194799_93195556
          Length = 758

 Score =  654 bits (338), Expect = 0.0
 Identities = 353/358 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacttgcctaaaatcaagctagtctgtagtttttccatccccaaaggggaagataatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atacttgcctaaaatcaagctagtctgtagtttttccatccccaaaggggaagataatag 499

                                                                       
Query: 61  acccttaggcagacttcctctgcttaaataaaattcctgtgaaatggttccttataaaca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 accctttggcagacttcctctgcttaaataaaattcctgtgaaatggttccttataaaca 439

                                                                       
Query: 121 tttgtcacatattctcaggacatgttgcaccagaagcaggctctaagaaggtggactacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgtcacatattctcaggacatgttgcaccagaagcaggctctaagaaggtggactacc 379

                                                                       
Query: 181 tggggtgggtcaccctttgttcacacacctttgtcgagtcccagaaaggagagagcaaac 240
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 378 tggggtgggtcaccctttgttcacacacctttggggagtcccagaaaggagagagcaaac 319

                                                                       
Query: 241 ttttatgaaggcatgggtcttttctccatctctttttaacagttttattagtatatacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttttatgaaggcatgggtcttttctccatctctttttaacagttttattagtatatacac 259

                                                                     
Query: 301 agcatgcatattaaaagatgtggaccacaagactaatgatttgtgtacaaactgaagc 358
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 258 agcatgcatattaaaaggtgtggaccacaagtctaatgatttgtgtacaaactgaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)