BAC Information

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BAC

Clone NameMSMg01-069L10
Chromosome13 (Build37)
Map Location 68,837,625 - 68,837,801
singlet/doubletsinglet
Overlap geneAdcy2
Upstream geneZfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069L10.T7 (MSMg01no069_l10.b1)MSMg01-069L10.TJ (MSMg01no069_l10.g1)
ACCAG293906AG293907
length720759
length of high quality
(start - end)
180 (43 - 222)175 (179 - 353)
definitionCHROMAT_FILE: MSMg01no069_l10.b1 PHD_FILE: MSMg01no069_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:32 2005CHROMAT_FILE: MSMg01no069_l10.g1 PHD_FILE: MSMg01no069_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTCCAGAGAGGATCCGCGGAATTCATATTTCTCACTTTTAAGGATTA
AACAATTTCTTTAATTCTTCTACTGGTTCTGAAGCACAGATTCCCACATG
TATAATTCAAGTGTATTCGTCCTATTCTCTGCTACTGCAGGATCCTTGCA
TGTCTTTGCATGAAATCTGCATGTCCTGTGTCCTTTAAGAGCTTTTGTCT
CTTATGTTTTATTTTTCTGCTTTTGTTTTTGTTTTGTTTTGTTTTGTTTT
GGTGCTAATGGTTGTTTTTCTTCCCACTTTTTTTCCTTTTTTTATCTTTT
CCCCCACCCTCCTTTTTTTCTCTTTTTTATTTTTATCTCCCCCCCATCTC
TTTCTCCACCCCCCTTACCCACATATATTTTTCCTTTACCCCCCCATTTT
CTTTTTCCACTCACTTTATTCCTCTCTCCCTTTTTTCCCATTTATGCCTC
CCTTATTCATTTTTTCTTTTCCCCCCCTCCCCCCTCTTTTTCTTCCGTCC
TCTATTCCCTCACCATTCCCTCCTATTTTTCCCTTTTTCTTCTATCCCCC
CCTTTTTCTTTCTCTTTTTTATACTTTTTTTCTCTATTACCCCCCCCCAC
TTACATTCCTTTCCCCTTCCCTTTTTCCTTTCTTTTCCCCCCTTTTCCAC
TTTCTTATTTTTTTTCCCTTTATCACTCCCTTTCACTTTTTCTTTATTTC
TCCTTTTCTCCCACCTCCCT
TTTTTTCTTTTTTTTTTTTTTTTTCTTTTTTTCCCTCTTTNNCCAGATAN
NNNNTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGACACAAAGAAATCTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAATATGCCCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTAAGATTCCACCTCACTCCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAACCCGCCTGGCGGTTCTTTTTTAAATTGGACATAGTACTACCGGAAG
ATCCAGCTTTTTTTCTCCTGCCCCCCCCCCCCGAAGATGCCCCAACTGGT
AAGAAGGATACATGCTCCACTATGATCAAAAAAGCATTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATAGA
AAATGTGGTACATCTAATCTATGGAGTATTACTCCGTTATTACAAATAAT
GAACTTACGAAATTCCTAGCCAAATGGTTGGACCTGTTAGGGCATCATCT
TGAGCGAGTTATCACATTCTCCAAGGAATTCCCATCATATGCACCCATTG
ATTAGTGGATATTAAGTTCTAAACCCACGATATTTAATATATTGTATACC
ACCTCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_l10.b1 MSMg01no069_l10.b1 CHROMAT_FILE:
MSMg01no069_l10.b1 PHD_FILE: MSMg01no069_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:32 2005
         (180 letters)



>mm_chr13_68837425_68838004
          Length = 580

 Score =  327 bits (169), Expect = 3e-94
 Identities = 175/177 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggattaaacaatttctttaattcttctactggttctgaagcacagattcccacatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaggattaaacaatttctttaattcttctactggttctgaagcacagattcccacatgta 318

                                                                       
Query: 61  taattcaagtgtattcgtcctattctctgctactgcaggatccttgcatgtctttgcatg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taattcaagtggattcgtcctattctctgctactgcaggatccttgcatgtctttgcatg 258

                                                                    
Query: 121 aaatctgcatgtcctgtgtcctttaagagcttttgtctcttatgttttatttttctg 177
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaatctgcatgtcctgggtcctttaagagcttttgtctcttatgttttatttttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)