Query= MSMg01no070_l09.b1 MSMg01no070_l09.b1 CHROMAT_FILE:
MSMg01no070_l09.b1 PHD_FILE: MSMg01no070_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:52 2005
(350 letters)
>mm_chr13_118218993_118219742
Length = 750
Score = 642 bits (332), Expect = 0.0
Identities = 346/356 (97%), Gaps = 9/356 (2%)
Strand = Plus / Minus
Query: 4 agttgttaagaacctttttaattgctacagttaaagttgcagagggtaggagctttagtt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agttgttaagaacctttttaattgctacagttaaagttgcagagggtaggagctttagtt 623
Query: 64 ttataataaaaacatcattatttttctgctgatgatgaacagacaccatctgtatcatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttataataaaaacatcattatttttctgctgatgatgaacagacaccatctgtatcatgt 563
Query: 124 gcc---------tttttttttttttgactaagaccatatccctctgttgtgtatctatcc 174
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gccttttttttttttttttttttttgactaagaccatatccctctgttgtgtatctatcc 503
Query: 175 caattaccaacaccaaaacatttcagtgaaggattatcatttgaggttattcaaccttag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caattaccaacaccaaaacatttcagtgaaggattatcatttgaggttattcaaccttag 443
Query: 235 acctctgctttctcacctctagatcatcttacctttgaggtttctgtgctaagtcagtta 294
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acctctgctttctcacctcaagatcatcttacctttgaggtttctgtgctaagtcagtta 383
Query: 295 gcatgaataggccaagagttaattgatgtactttaacaaactaagtctatctcata 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcatgaataggccaagagttaattgatgtactttaacaaactaagtctatctcata 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_l09.g1 MSMg01no070_l09.g1 CHROMAT_FILE:
MSMg01no070_l09.g1 PHD_FILE: MSMg01no070_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:52 2005
(497 letters)
>mm_chr13_118061104_118062000
Length = 897
Score = 843 bits (436), Expect = 0.0
Identities = 483/506 (95%), Gaps = 16/506 (3%)
Strand = Plus / Plus
Query: 1 agttctcagcaactacatgatcacaaccatctaatgggaactgataccctttttttt--- 57
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 193 agttctcagcaaccacatgatcacaaccatctaatgggatctgatacccttttttttttt 252
Query: 58 --ggtgtgtctgaagacagctacagtgtactcatatgcataaaataaataaaccaacctt 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttggtgtgtctgaagacagctacagtgtactcatatgcataaaataaataaaccaacctt 312
Query: 116 taaaaaaaataatggtatccttttctaccagagaatatgtgttaataataatcctgtctc 175
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 313 taaaaaaaat---ggtatccttttctaccagagaataggtgttaataataatcctgtctc 369
Query: 176 agcctcttgagtactgggattacatgtcc-gtaccatcatacatagctttatttcatggt 234
|||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct: 370 agcctcttgagtactgggattacatg-cctgtaccatcatacacagctttatttcatggt 428
Query: 235 ctttatat------aagtatacattttctcccttgggctagtttttttcaaaagtttcat 288
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctttatatttatataagtatacattttctcccttgggctagtttttttcaaaagtttcat 488
Query: 289 gtaatttttaaattctcatctcaaagtttctgtagttttctgttttatttccttacatgc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 489 gtaatttttaaattctcatctcaaagtttctgtagttttctgttttatttccttatatgt 548
Query: 349 ccatataattgatgcgatgaattcatccaccatagcaaacttccctaattgatttgtaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ccatataattgatgcgatgaattcatccaccatagcaaacttccctaattgatttgtaat 608
Query: 409 tgtctcaattcatcgttgtttgaacttgctttgtccctagttggcaagctcacttgccag 468
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgtctcaattcagcgttgtttgaacttgctttgtccctagttggcaagctcacttgccag 668
Query: 469 gccttctctgctttgctaaagtgatg 494
||||||||||||||||||||||||||
Sbjct: 669 gccttctctgctttgctaaagtgatg 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
