BAC Information

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BAC

Clone NameMSMg01-070L24
Chromosome13 (Build37)
Map Location 43,909,215 - 44,069,478
singlet/doubletdoublet
Overlap geneLOC100039432
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83
Downstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L24.T7 (MSMg01no070_l24.b1)MSMg01-070L24.TJ (MSMg01no070_l24.g1)
ACCAG294697AG294698
length709697
length of high quality
(start - end)
243 (67 - 309)116 (158 - 273)
definitionCHROMAT_FILE: MSMg01no070_l24.b1 PHD_FILE: MSMg01no070_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:55 2005CHROMAT_FILE: MSMg01no070_l24.g1 PHD_FILE: MSMg01no070_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,909,215 - 43,909,457)(44,069,363 - 44,069,478)
sequence
ATTTGCGGCGCTAAACGATNACTATAGTGTGCAGGACCGCGGAATTCTCC
AGAGCTTTACCCGAAAACACGAGTTCATGGCTCCACAGTGCCCGTGTGCG
TGTTAGCCTCGGTCCCTGTGCTGTTTAGCGTGATTGTCCTCCGGCTGGTA
CAAACCACATCTCTCTTTCTCTCTCTTCCCCGGTGGGAGCTTGTCTCTGC
ACCTCTCCCTCCCCTCCCTGGAAGTACAGTGAAGCAAGTATCTTGTTCCA
AGCCCATTGCACACGTGCTCACATTTAGTGACCTTCTGCGCTAGTAATTC
TGTCCTCTGGGTATGGGAATTGATTTTTCTCTTTTCTGTATTGGAACACA
GCCTGGAGACCGCGGTCCTGTTACAAATGTCCATCTCAAGTGTGTGTTTA
AAGGTGATCAGTGTGAATCTTTAAAATACTACGAAAATAGTTGTTTTAAG
GATGCCCCTGTAAATCTCAACAAATGTTCAATTAAATGATACTCATTCTC
CTGATCGATGTTTAATTTCTCCTCTAAATATTCACGCACGGGTGTAAATA
GAGTTTGTCATGATTGTATATGTAAAGCCTTCATGTGTTTGAAAAGGATT
CCGATAACTTATTTTAATATCTGTCACTAATCCTACTCTGTGAATTTGGG
GTATACTGAATACTTTTCTTGTGTATCCCTATAAGCCTCTTATTTTTAAT
GTGCATCAG
TGAGTGAGTAGGCTGGCGGCGCCTGGCCGATTCCTACCGGCGAGCTATAG
AAGGATTTGCCAAAAACACAATAAGAAGACTTTAAGTTAACTGTCCCATG
GTGACTAGCCTTGATGCAGCGCTATCAGGACTTTGTGTTGTCACAAGAGA
GAGAATGTTCATGTATGTTATTTGCTGGAGACTAAGCCATAGCTATGAAG
CCTACGTTGTGTATCTTACGTGCATTCTAGTCTATCAAGTCTAGGACGGA
CTGGCTCAAGATGGAAACTATTGTTGAGGAAGGTGCTCTGATACATGAGA
GTGCTATTCTGACTCATCACCTTGGTCACGGCGATTCTCTGTTCTGTGGA
CTTATTATCTAATGGAATATCCCGACAGTGAGCATTTCTCTGATGTATTA
TTTTTTAAGGATCTGAGCCTGTGACCTAAACTATTAATTTCTCTGAATTG
TGCCATTGCTCTGCTGTGAATCTTGGATTTTTATGTAATACATTGACTTT
TATACAACGATGTGATTCTGTGTATAAAATATCTCTTAATCACGTTGATC
ATTAAGAGATACAACAATTAAACCCCGTCTATATATAATAAATGGATCAT
GAAGATTTTGACTCCCCTAGAGTGTCTGTATCATTTATTTTATTTTCAAA
TTTATTTTTTCCTACTTTAGGATGGATTCCCTTTCCCTCTGAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l24.b1 MSMg01no070_l24.b1 CHROMAT_FILE:
MSMg01no070_l24.b1 PHD_FILE: MSMg01no070_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:55 2005
         (243 letters)



>mm_chr13_43909015_43909657
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacgagttcatggctccacagtgcccgtgtgcgtgttagcctcggtccctgtgctgttt 60
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 acacgagttcgtggctccacagtgcccatgtgcgtgttagcctcggtccctgtgctgttt 260

                                                                       
Query: 61  agcgtgattgtcctccggctggtacaaaccacatctctctttctctctcttccccggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 agcgtgattgtcctccggctggtacaaaccacatctctctttctctctcttccccagtgg 320

                                                                       
Query: 121 gagcttgtctctgcacctctccctcccctccctggaagtacagtgaagcaagtatcttgt 180
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gagcttgtctctgcgcctctccctcccctccctggaagtgcagtgaagcaagtatcttgt 380

                                                                       
Query: 181 tccaagcccattgcacacgtgctcacatttagtgaccttctgcgctagtaattctgtcct 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaagcccgttgcacacgtgctcacatttagtgaccttctgcgctagtaattctgtcct 440

              
Query: 241 ctg 243
           |||
Sbjct: 441 ctg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no070_l24.g1 MSMg01no070_l24.g1 CHROMAT_FILE:
MSMg01no070_l24.g1 PHD_FILE: MSMg01no070_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:55 2005
         (116 letters)



>mm_chr13_44069163_44069678
          Length = 516

 Score =  209 bits (108), Expect = 5e-59
 Identities = 114/116 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatgtatgttatttgctggagactaagccatagctatgaagcctacgttgtgtatctt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 316 ttcatgtatgttatttgctggagactaagccacagctatgaagcctacgttgtgtatctt 257

                                                                   
Query: 61  acgtgcattctagtctatcaagtctaggacggactggctcaagatggaaactattg 116
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 256 acgtgcattctagtctatcaagtcaaggacggactggctcaagatggaaactattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)