BAC Information

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BAC

Clone NameMSMg01-072D12
Chromosome13 (Build37)
Map Location 97,144,860 - 97,145,159
singlet/doubletsinglet
Overlap genenone
Upstream geneAggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
Downstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072D12.T7 (MSMg01no072_d12.b1)MSMg01-072D12.TJ (MSMg01no072_d12.g1)
ACCAG295816AG295817
length721724
length of high quality
(start - end)
304 (66 - 369)515 (72 - 586)
definitionCHROMAT_FILE: MSMg01no072_d12.b1 PHD_FILE: MSMg01no072_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:53 2005CHROMAT_FILE: MSMg01no072_d12.g1 PHD_FILE: MSMg01no072_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTCGAGAAATCCGCGGAATTCTT
TGTGTTATCTGAATTTTCATGTAGATATCCTTATTGTCTGAAATTGAAGT
TCTAGCTTAGGTATTACTGAGTTTGAGATGGAAAGAAATGAGAGCAGGTC
ACAAATTGCACTGTTCTGCTATTGACATATTTCTCCACGAAGTCGCTGCA
GCACTTAGCCAACGCCAGCACTCCACACTGCGGTTGGTCTTCTGATTGTT
GGAAGAGAAAGACGGGAGGCATTAGTAGAGAAAAACCCTCTCCTGTAGGG
CTTACGGTGTTTTTTTTTTTTTTAATTTATTTTTATTATGGATATTTATG
ATGCCCGGTATCCTTGAAGAGTCTTCTAGTGTTTAGAAAATCTCCATTTG
TGCTTCTTGCCTCCCCAGCTTGCAGGAGGAAACTTGCTTTCCTGGCTTCC
CTTGCAGCCCGGCCATGGTATACTTGTATGTATCTCTGATTCAAATGTGT
CCGATGGGAGACAATAGGACATACATGTTATCTGTGTTGTGCGCCTCTGT
ACTGTTTACCATATCCAGATTCTTTGGTATCTGCTTCTGATTATCTCCGC
AAGTTCTGCACTTCTTGCACTCTCTTTGCTCACAAGGTGAGCCTATTCAT
TCTCACCTTTAATCTTTTTGTTTCCCTCACCTAGATTTTATACTTCCTCT
AATATTCCTTTCCTTGTTCGA
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTAAGCCCCATTTTTTAA
TGGGGTTATTTGATTTTCTGGAGTCCACCTTCCTTCTTGAGTTCTTTAGA
TATATTGGATATTAGTCCCCTAACTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGACCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTA
CAGAAGCTTTCCGGCTGAAACTCTTAATTACTGCTCTTATTTCACCAGGA
GTTATAGGTCTGCTTAAGTTGCTTATCTGATCTTGATTTAACTTGATAGA
TGATATAGATTAAGGAAATTATCCATTTCTATTATATTTTCCAATTTTCT
GGAGTACAGGTATTTAAAGTTTGTCCTTATGATTTTCTGGATTTCTTCAA
TATCTGTTATGTTCTCTTTTCATCTCTAATTTTGTTCATTTGGGTCTTTT
CTCTCATCAACTTTTAGTTAATTTGCCTAAGGGTTTGTCAATGTTACATA
TTTTCTCAAAGAACCAACTCTTTGTTTCATTGAATCCTTGTATTGGCTTT
TGTTTGTTTGCTTGTTTCTATTTTATTGATTCAGGCCTGAGTTTGATTAA
TTCTTTCCATCTACTCCTTTTGGATGGGATGTCTTCTTTTGGTTGTAGCA
TTTTTAGGTATGCTGTTGAGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_d12.b1 MSMg01no072_d12.b1 CHROMAT_FILE:
MSMg01no072_d12.b1 PHD_FILE: MSMg01no072_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:53 2005
         (304 letters)



>mm_chr13_97144716_97145419
          Length = 704

 Score =  543 bits (281), Expect = e-159
 Identities = 297/305 (97%), Gaps = 6/305 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatgtagatatccttattgtctgaaattgaagttctagcttaggtattactgagtttg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 ttcatgtagatatccttattgtctgagattgaagttctagcttaggtattactgagtttg 385

                                                                       
Query: 61  agatggaaagaaatgagagcaggtcacaaattgcactgttctgctattgacatatttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatggaaagaaatgagagcaggtcacaaattgcactgttctgctattgacatatttctc 325

                                                                       
Query: 121 cacgaagtcgctgcagcacttagccaacgccagcactccacactgcggttggtcttctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacgaagtcgctgcagcacttagccaacgccagcactccacactgcggttggtcttctga 265

                                                                       
Query: 181 ttgttggaagagaaagacgggaggcattagtagagaaaaaccctctcctgtagggcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgttggaagagaaagacgggaggcattagtagagaaaaaccctctcctgtagggcttac 205

                                                                       
Query: 241 ggtgttttttttttttttaattt-atttttattatggatatttatgatgcccggtatcct 299
           |||||||||||||     ||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggtgttttttttt-----aattttatttttattatggacatttatgatgcccggtatcct 150

                
Query: 300 tgaag 304
           |||||
Sbjct: 149 tgaag 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)