BAC Information

Click to search

BAC

Clone NameMSMg01-072F20
Chromosome13 (Build37)
Map Location 32,820,464 - 32,820,975
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxc1, 4930548F15Rik, Gmds, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072F20.T7 (MSMg01no072_f20.b1)MSMg01-072F20.TJ (MSMg01no072_f20.g1)
ACCAG295926AG295927
length726730
length of high quality
(start - end)
514 (37 - 550)522 (71 - 592)
definitionCHROMAT_FILE: MSMg01no072_f20.b1 PHD_FILE: MSMg01no072_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:05 2005CHROMAT_FILE: MSMg01no072_f20.g1 PHD_FILE: MSMg01no072_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAATACACTCCTATAGTCCGAAATCCGCGGAATTCCTCT
GAACAATCCTATCTTGTCTTGTCTTTCCACGTGACATATGACACAACTCC
TCTGCACTTCTAATGCACTGGTCTTCTCTGCATTTTTCTTGTTGAGTTTG
GTAATCTTTTCTTTCTCAGAAGAGAATTGGTCATTCTGGTCAGATTTCTC
TAGAAGTCACAGAACACAAAACATTTTAATGAAGAATGCACATGGTCACT
AATTTTGGCTTTACTTAATGGCACCTCTCTTCTGGCCCCTTTTTAACATT
AGATTTAAGCTTTCAGAATCTAAGCAGAATAAAATATACCCCGCTGACTA
ATAACTGCATATCAAAATATTTTATTTGTCATGGTTATGGCCAAACCCAG
TCAGGTAAAGATATTAATAAAACAGCACTCCTTTCTAAGGATTCAGGAAT
GTGTGATTTCCTCTGAATAAGAGTACAACAGAACTTTCTCCATAACTAGT
AAATCTCCTAGGATGTTACCTGTGAGGGCTGATGTCCTTCCTCCTTTGAC
AATTGTCCTTTCATCTAGCGCACGGTTGGACCATACTTTTTCCTCAGCCT
GTGGGTTGCACAATCAAGCAATTGAGGTTAACAAAAGTGTACACTCTGCT
TAGCTTCAGCACTGTCATCACAGGCTATCTAATTCTTCATGTGACGAGCA
TCATATTACCATGATATTTAATATTA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCCGAAATCATCCCTGGGATGAAGCCAATTTGATCATA
GTGAATGATCTTTTTAATGTGTTCTTGGATTTGGTTTGTGATTATTTTAT
TAGGAATTTTGTTCTGTAATTTTCTTCCTTTTATGACCAAAATATGGTTT
AGATATTAGGCTAATTCTGGATTGATAAAAAGAATTGGGCAGTATTCTTT
CTGTACCAGTTTTGTAGAATAACTTGAGGAATATTGGCATTCATTCTACT
TGGAAATTCTGCTTTAAAAACTATCTGTTCCTGGAATTTTTTGGCCGTTA
GATTTTAATTACTGCTTATATGTTCCTAGGGATTATATTTCTGTTGAAAT
TGCTTATATGATCTTGATTTGACTTAGGTACATGGTATATGTCAAGAAAA
TGTTCCATTTCTTTTAGATTTTCTAAGTTGGTGGTATATAAGTTCTCAAA
ATACATCCTTTTGATTCTCTCGGTTTCTGTGGTGGCTATTATATCCCTCT
TTTGTTCTTTAATTTTGTTAATTTGAATCTCCACTCTTCATGTTTAAGGG
TTTGGCAATTTTATTGATTTTGTTGAATAACCTCTCTTATTTCCCCCAAA
AGTTCATTCCTTGACTTCTACTTCCAAAAGGGCATGATTTCTTTCTTTTT
GCTCAAGAACTTCCAAGTTTGAAATTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_f20.b1 MSMg01no072_f20.b1 CHROMAT_FILE:
MSMg01no072_f20.b1 PHD_FILE: MSMg01no072_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:05 2005
         (514 letters)



>mm_chr13_32820261_32821175
          Length = 915

 Score =  853 bits (441), Expect = 0.0
 Identities = 495/513 (96%), Gaps = 3/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctctgaac-aatcctatcttgtcttgtctttccacgtgacatatgacacaact 62
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctctgaacaaattctatcttgtcttgtctttccacgtgacatatgacacaact 263

                                                                       
Query: 63  cctctgcacttctaatgcactggtcttctctgcatttttcttgttgagtttggtaatctt 122
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 264 cctctgcacttctaatgcactggtcttctctgaatttttcttgttaagtttggtaatctt 323

                                                                       
Query: 123 ttctttctcagaagagaattggtcattctggtcagatttctctagaagtcacagaacaca 182
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 ttctttctcggaagagaattggtcattctggtcagttttctctagaagtcacagaacaca 383

                                                                       
Query: 183 aaacattttaatgaagaatgcacatggtcactaattttggctttacttaatggcacctct 242
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 aaaaattttaatgaagaatgcacatggtcactaattttggctttatttaatggcacctct 443

                                                                       
Query: 243 cttctggcccctttttaacattagatttaagctttcagaatctaagcagaataaaatata 302
            ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 444 tttctggcccctttttaacattagatttaagctttcagaagcaaagcagaataaaatata 503

                                                                       
Query: 303 ccccgctgactaataactgcatatcaaaatattttatttgtcatggttatggccaaaccc 362
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccagctgactgataactgcatatcaaaatattttatttgtcatggttatggccaaaccc 563

                                                                       
Query: 363 agtcaggtaaagatattaataaaacagcactcctttcta-aggattcaggaatgtgtgat 421
           |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 564 agtcagataaagatattaataaaacagtactcctttctacaggattcaggaatgtgtgat 623

                                                                       
Query: 422 ttcctctgaataagagtacaacagaactttctccataactagtaaatctcctaggatgtt 481
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcctctgaattagagtacaacaga-ctttctccataactagtaaatctcctaggatgtt 682

                                            
Query: 482 acctgtgagggctgatgtccttcctcctttgac 514
           |||||||||||||||||||||||||||||||||
Sbjct: 683 acctgtgagggctgatgtccttcctcctttgac 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space:   456120
Effective search space used:   456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)