BAC Information

Click to search

BAC

Clone NameMSMg01-072G14
Chromosome13 (Build37)
Map Location 18,849,269 - 18,849,652
singlet/doubletsinglet
Overlap geneVps41
Upstream geneCdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072G14.T7 (MSMg01no072_g14.b1)MSMg01-072G14.TJ (MSMg01no072_g14.g1)
ACCAG295961AG295962
length701699
length of high quality
(start - end)
572 (44 - 615)384 (70 - 453)
definitionCHROMAT_FILE: MSMg01no072_g14.b1 PHD_FILE: MSMg01no072_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:09 2005CHROMAT_FILE: MSMg01no072_g14.g1 PHD_FILE: MSMg01no072_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTGATGACTACCGAAGAGCTGAGAAGCACCTAAAGAAATGTTCA
ACATCCTTAGTAATCAGGAAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACTAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAT
GCTGGATAGGATGTGGAGGAACACGTCTCCATTGCTGGTGGGATTGCAAT
CTGGTACAACCACTCTTGAAATCAGTTTGGTGGATCCTCAGAAAATTGGA
CATAGTACTACCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCTC
TAACATGTAATAAGAACACATGCTCCTCTATGTTCATAGCAGCCATATTT
ATAATAGCCAGAAGCTAGAAAGAACCCAAATGTCCCTCAACAGAGTAATG
GATACAGAAAATGTAGTATATTTACACAATGGAGTACTACTCAGTAGTAT
TAAAAACAATGACTATGTGCAAATGGATGGAACTAGAAAATGTCTTCCTG
AGTGAGGTAACTCAGTCACAAAAGAAAACACATGACATGTACTCACTAAC
TGGTAGATATTAGCCCAAAAGCTTGGAATACCCAAGATACAATTCACAGA
CCATTATGAAGTTAAGAAGAAGGAAGACCAATGTGTGGATCCTTCAGTTC
T
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTTGATAAATATCATCGAGTGGGTGGGCTT
CTTTTAAATAAGTTCTGAAAGGTAGGGGGGCCATGCCAGATGTCATCCAG
GTTCTGATCCAAGTTGCTCTGTTTCCCTACAGTGAGGCATGCCATGTTAC
ACCCACCAGCATTGTTTGCTGCCGTGTCACTCCTTCTGGTTGCTGTCATT
GGCGAGTCTCATGAAGAATCTCATGGATTTAGGTTTCAAGATGATTAAGT
TTGTAGTTTTCTGGTTACTTTCTAGGCTTTTTACTTGAGAGTAGTTAGTT
CATGTATTTTGTTAGTATGTTTGTAAGGCTCTAAATTGCTTTGCACTTAA
AACATTTCTTGTTTACAGGCAAAACTAACAAGAGTGAGAAATTAACTCTT
GAGTAGGGTGGGTCATGTAATGATTCAGAATCTGAGTCATCACTAGAAGT
TAAATTTAATGACTTTCAACCTTAAAATAGGGGGTGTGACCACTTTTCTA
TTGTCTTGATAATTTAAATATGATCTTCATTGGTTTCATTGACTTAGATA
TTTTGATTCTTTATGTTTTAAAAAAGCTAATTGCCAGTTCTTTTTTTAAA
AAAAATATGTTATTCTGTAAAAAATGTACCTCTATATGAAATGTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_g14.g1 MSMg01no072_g14.g1 CHROMAT_FILE:
MSMg01no072_g14.g1 PHD_FILE: MSMg01no072_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:09 2005
         (384 letters)



>mm_chr13_18849069_18849852
          Length = 784

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttgataaatatcatcgagtgggtgggcttcttttaaataagttctgaaaggtaggggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gtttgataaatatcatcgagtgggtgggcttcttttaaataagttctgtaaggtaggggg 260

                                                                       
Query: 61  gccatgccagatgtcatccaggttctgatccaagttgctctgtttccctacagtgaggca 120
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 261 gccatgccagatgtcatccaggttctggtccaagttgttctgtttccctacagtgaggca 320

                                                                       
Query: 121 tgccatgttacacccaccagcattgtttgctgccgtgtcactccttctggttgctgtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccatgttacacccaccagcattgtttgctgccgtgtcactccttctggttgctgtcat 380

                                                                       
Query: 181 tggcgagtctcatgaagaatctcatggatttaggtttcaagatgattaagtttgtagttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tggcgagtctcatgaagaatctcatggatttaggtttcaagatgattaagtttgtatttt 440

                                                                       
Query: 241 tctggttactttctaggctttttacttgagagtagttagttcatgtattttgttagtatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tctggttactttctaggctttttacttgagagtagttagttcatgtattttgttaatatg 500

                                                                       
Query: 301 tttgtaaggctctaaattgctttgcacttaaaacatttcttgtttacaggcaaaactaac 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtaaggttctaaattgctttgcacttaaaacatttcttgtttacaggcaaaactaac 560

                                   
Query: 361 aagagtgagaaattaactcttgag 384
           ||||||||||||||||||||||||
Sbjct: 561 aagagtgagaaattaactcttgag 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)