Query= MSMg01no072_i06.b1 MSMg01no072_i06.b1 CHROMAT_FILE:
MSMg01no072_i06.b1 PHD_FILE: MSMg01no072_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:17 2005
(567 letters)
>mm_chr13_25401718_25402685
Length = 968
Score = 982 bits (508), Expect = 0.0
Identities = 520/526 (98%), Gaps = 5/526 (0%)
Strand = Plus / Minus
Query: 3 ggaattcattttgga---tacttattaagtctctctcagctctaaattactgaatcagag 59
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggaattcattttggagatt--ttattaagtctctctcagctctaaattactgaatcagag 467
Query: 60 ctcagaaatgacaccacagggggcagaaaggggtcatttgaattcttcatatttcagatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctcagaaatgacaccacagggggcagaaaggggtcatttgaattcttcatatttcagatc 407
Query: 120 tgtctgagtcatctggccagctcaccatcactaaggaagttggataagagtctaaagttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtctgagtcatctggccagctcaccatcactaaggaagttggataagagtctaaagttg 347
Query: 180 ttcactatctctcaactccttccttccatccctctggagccaactttcagcttctatacc 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttactatctctcaactccttccttccatccctctggagccaactttcagcttctatacc 287
Query: 240 tttccttccaggaggacctctacagcactggccctttcctaacttctacacagcagctaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tttccttccaggaggacctctacagcactggccctttcctaacttctacacagcagctaa 227
Query: 300 gaacaatctttcactttcttagtatttttgaagcagtgtctcaggcagccaggctaccct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaacaatctttcactttcttagtatttttgaagcagtgtctcaggcagccaggctaccct 167
Query: 360 tgaacccattatgtaccctgaacttcagatcttccttcctccacctcctgaaatctagga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tgaacccattatgtaccctgaacttcagatcttccttcctccacctcctgaaatctagga 107
Query: 420 tcataggcacgcatcttgtgttttcctggcgataaaacctaaggtttcatgcatgctgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tcataggcacgcatcttgtgttttcctggcgataaaacctaaggtttcatgcatgctgtg 47
Query: 480 aaattactctaccaaatgagtgaactttattgccccagatctgcct 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 aaattactctaccaaatgagtgaactttattgccccagatctgcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_i06.g1 MSMg01no072_i06.g1 CHROMAT_FILE:
MSMg01no072_i06.g1 PHD_FILE: MSMg01no072_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:17 2005
(444 letters)
>mm_chr13_25217474_25218317
Length = 844
Score = 758 bits (392), Expect = 0.0
Identities = 428/444 (96%), Gaps = 7/444 (1%)
Strand = Plus / Plus
Query: 1 caagagcaggcaaagggtcagatgttagaactcccacataacacccgaagctaaacaacc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 208 caagagcaggcaaagggtcagatgttagaactcccac-------ccgaagctaaacaacc 260
Query: 61 acagcatgtatgcagaggacctagcacagacccatgcaggatccgtgattgctgcttcag 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 261 acagcatgtatgcagaggacctagcacagacccatgcaggatctgtgattgctgcttcgg 320
Query: 121 tctctgtgaacccctgtgaactctacttagttgatcctgtgggcgatgttctcctggtgt 180
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 321 tctctgtgaacccctgtgaactctgcttagttgattctgtgggcgatgttctcctggtgt 380
Query: 181 ccttgacccctctggctccaacaatcctttctccctctctcccatggggtcccctgagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgacccctctggctccaacaatcctttctccctctctcccatggggtcccctgagct 440
Query: 241 cttcatgatgttcgagtgtggttctctgtatctgcttccagcagctgccagaggaagtct 300
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctgcatgatgttcgagtgtggttctctgcatctgcttccagcagctgccagaggaagtct 500
Query: 301 ctctgatggtaactgggctaggcactaatctacacaaggattttcaaacctttgcagagt 360
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 501 ctctgatggtaactgggctaggcaccaatctacacaaggattttcaaacctttgcaaagt 560
Query: 361 agatttcaagaattcattttaagtaggtattttgggactcagatgatattatgcatatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatttcaagaattcattttaagtaggtattttgggactcagatgatattatgcatatat 620
Query: 421 gtattttataaacctcaatgtgat 444
|||||||||||| |||||||||||
Sbjct: 621 gtattttataaatctcaatgtgat 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
