BAC Information

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BAC

Clone NameMSMg01-073D02
Chromosome13 (Build37)
Map Location 49,674,543 - 49,783,180
singlet/doubletdoublet
Overlap geneCenpp, Omd, Ogn, Nol8, Iars
Upstream geneAW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Tes3-ps, Ecm2, Aspn
Downstream geneLOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073D02.T7 (MSMg01no073_d02.b1)MSMg01-073D02.TJ (MSMg01no073_d02.g1)
ACCAG296552AG296553
length699706
length of high quality
(start - end)
328 (47 - 374)232 (75 - 306)
definitionCHROMAT_FILE: MSMg01no073_d02.b1 PHD_FILE: MSMg01no073_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:11 2005CHROMAT_FILE: MSMg01no073_d02.g1 PHD_FILE: MSMg01no073_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,674,543 - 49,674,866)(49,782,949 - 49,783,180)
sequence
TGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGTTTTTTCTGCTTTATGTAAGAGAGTATGAGACTGGGATGG
GGGAAACTGTTTACAGAAAAAGTCAATGTTGAAGGAAAAGAAAGCTTATG
AAAGAGTTTGTTTCTCAGTGAATACAAAGTAAGTGGTGAGCCATGTTTGT
CCAGGAAAATGTGGTACTCAGTGTGTGGGCTAGTACTACAGCTATCCAAC
AGGGCCCATCTGAAAGAGCTCACTTACTAGATACTGTATTTCCTCTGCAA
GCATGGTTCCAAGCCAGTGAAGTACGTGTAATCCCAGCTAGCAGGGAGAC
CATGGCCAGATAATTGCTTATACTACCGGGCTTGAAGCTAGTCTAGACAA
CATGGCATAATTTTTGTTTTTATAATAAACAAAATAACTAGTACGATTCC
ATTTACAGCATTGGAAGGAGGGCCCGTCCAAGTATAGGTCTACCTAGACG
CTGTCTCTGGTTAGCCCTCTGTCTTAGTTAGTGTTCCCTATTTTGGTGAT
GACATATTCTTGACCAATGTAACTGTTTCCCATGCTATCCTTTTTTTGGC
CCCCGCTTACCTTTCTTACGCTTAGTCCTTTACCCTTTTGACGGGCAACC
TTGCCATCCCGCGTCCGTTTACGTCCTCCCTGTTTTTACGCCTCATTTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGATTTGACATTAGTAGTCTTTCC
TAGCAATAGAGACTAAGGCAGGAAATACTGCAGGACCCAGCCACACAGGG
CAGAGATGATTGTAAATGCAAGAAAGAAAGCAAAGCGGTAAATAATCTCC
ATTCCTACGACTTCTGACAACCAGGAACTCACCCGTTCCTGTCCAGATTC
CTACTGTACGGAAAGGCACAGACTCTGAGAACTTACAGGTGAACGAAGGG
TGGGCATTAAGGTAGTGCAGCACTAGAGAAGGCTGTGTGTAAGGAGCCTG
TCTTTACTGCATAAACTCACGCACTTTGTCCTGAGATTTGACTGTCTGAG
GCATTCCTGGATTCAGCTATGTTTGGACCAGAACTCTCCGATTCTTTCCT
CTTTCGCTTGAAACCTGACGTTTCCTTCTTTCCCGTCGTCCCTTCCTGTT
GCCCATTTCTTCTTCCTTCCGCCCTTCCCTTTTAACCTCTTTCCTTCTCT
ACTCTCTATCCTCTTTTTCTTTTCCTGTTCCATCCCTTTCTGTTCCTCTC
CCTTTCCTCCCCCTTCTTCCTTTCCTCCCCCTTCCTTCCCCTTTCTTTCT
TCCCCTTCCCCTTTCTTTTCTTTCCTCTCCTTTCTCTTCCCCCCCTTCCC
TCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_d02.b1 MSMg01no073_d02.b1 CHROMAT_FILE:
MSMg01no073_d02.b1 PHD_FILE: MSMg01no073_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:11 2005
         (328 letters)



>mm_chr13_49674339_49675066
          Length = 728

 Score =  603 bits (312), Expect = e-177
 Identities = 321/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagttttttctgctttatgtaagagagtatgagactgggatgggggaaactgt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtttcttctgctttatgtaagagagtatgagactgggatgggggaaactgt 264

                                                                       
Query: 65  ttacagaaaaagtcaatgttgaaggaaaagaaagcttatgaaagagtttgtttctcagtg 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttacagaaaaagtaaatgttgaaggaaaagaaagcttatgaaagagtttgtttctcagtg 324

                                                                       
Query: 125 aatacaaagtaagtggtgagccatgtttgtccaggaaaatgtggtactcagtgtgtgggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatacaaagtaagtggtgagccatgtttgtccaggaaaatgtggtactcagtgtgtgggc 384

                                                                       
Query: 185 tagtactacagctatccaacagggcccatctgaaagagctcacttactagatactgtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtactacagctatccaacagggcccatctgaaagagctcacttactagatactgtatt 444

                                                                       
Query: 245 tcctctgcaagcatggttccaagccagtgaagtacgtgtaatcccagctagcagggagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctctgcaagcatggttccaagccagtgaagtacgtgtaatcccagctagcagggagac 504

                                   
Query: 305 catggccagataattgcttatact 328
           |||||||||| |||||||||||||
Sbjct: 505 catggccagagaattgcttatact 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no073_d02.g1 MSMg01no073_d02.g1 CHROMAT_FILE:
MSMg01no073_d02.g1 PHD_FILE: MSMg01no073_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:11 2005
         (232 letters)



>mm_chr13_49782749_49783380
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatttgacattagtagtctttcctagcaatagagactaaggcaggaaatactgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actgatttgacattagtagtctttcctagcaatagagactaaggcaggaaatactgcagg 373

                                                                       
Query: 61  acccagccacacagggcagagatgattgtaaatgcaagaaagaaagcaaagcggtaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acccagccacacagggcagagatgattgtaaatgcaagaaagaaagcaaagcggtaaata 313

                                                                       
Query: 121 atctccattcctacgacttctgacaaccaggaactcacccgttcctgtccagattcctac 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 312 atctccattcctacgacttctgacaaccaggaactcacccattcctgtccagattcctac 253

                                                               
Query: 181 tgtacggaaaggcacagactctgagaacttacaggtgaacgaagggtgggca 232
           |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgtagggaaaggcacagactctgagaacttacaggtgaacgaagggtgggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)