BAC Information

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BAC

Clone NameMSMg01-073G22
Chromosome13 (Build37)
Map Location 60,456,233 - 60,456,741
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073G22.T7 (MSMg01no073_g22.b1)MSMg01-073G22.TJ (MSMg01no073_g22.g1)
ACCAG296734AG296735
length721716
length of high quality
(start - end)
526 (44 - 569)195 (122 - 316)
definitionCHROMAT_FILE: MSMg01no073_g22.b1 PHD_FILE: MSMg01no073_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:29 2005CHROMAT_FILE: MSMg01no073_g22.g1 PHD_FILE: MSMg01no073_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGA
ATTCTCTACCATGTCCATAAAATGGACTTTGATCTCTGCTTTGTACTGTA
CACAAATGTTAACTCAGATCGATTATAAATTTTGTGAAATATAAAAGTGC
AAAACATCTAGAAGAAAATCTTGCAAATTTGAATGATATAAACATCTTAT
ATACAGCAACTGAAGATATAATACATAAAATAATTATCTCTGTGTCTCTG
TCTGTCTCTCCCTCTGTCTGTCTGTCTGTCTGTCTCTTTCTCTCTCTCTC
TCTCTGTCTATCTCTCTGGATGTTTTTATCATAAAAGCTCTGTTTAAGCA
GTGATGCAGATCTAGGAGGGGTGAGAAAAGGAAATAAGATGGGAGATGAC
ATCCAGAGAAGGCCGTTGAATGGTCATGTTTTGAACAAGCGATGAGCAGC
AGGAAGAGAACCAGAAAGAAATTATGTCACAGAAACCTGTAGCAAGGGCG
CTGACATGATTGTATGGCTTTGAATAAGCTTCCTTTCTCAATAGCAAAGG
AGCAGTAATCCTTTACTGNAAAGAAAATGCATATAGCAGCTGGCTAATGC
CTCCCCTACCTAAGTCCACTTAATTCTTACACCATCCTCCTGAGGCAGAC
ATTTGAGTTCTAATTACAGACCAAGAAAACACGTCTCCCACAGGCAAGAG
ACTTGTTCCAATATGGCCCAA
CATGCAGTGGGAGGCCTGGNGGCGCCTGGTTCCTTACGGAGGNGAACNAN
AGAAGGTTTCCAGCACTAAGGGAAAANGAAAGAAATGGTCCTTTCTTAAC
AGNCACAGATAGTTCACCCACTGGGAAGAAATCTAAGTGTCTTAGGGTTT
TACTGCTGTGAATAGACACCATGACCAAGGCAACTCTTATAAGAACAACA
TTTAATTGGGGCAGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCTT
GGTGTGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGA
GTTCTACACCTTCTTTCGATGGTTGTTAGGAGAAGACTGACTCCCATGAG
GTTAGGAGGAGGATCTCAAAGCCCATCCCTCACAATGATACACTTCCTCC
AACAAGTCCACACCTCCCAGTGGTGTCACTTCCTGGGCCAAGCTCATTCA
AACCACCACACCAAGGAAACAAAAGATGCCTGCTATGAAAACTTTAAAGC
GCTCGATGAACACCTGGAGAGACGGCTCACTGGTTAAGAGCAGCTGCCGG
TCTTACAGAAGATCTGAATTCAGTCCCCAATATTTCACATGACACTCACA
AACATCTGTAACTACCATTCCTGGAGATCCAAGGGCTTCTTCTGATCTCC
GTAATATTTTTTTTTTCTCCCGGTAACGATACATACCTGTTAAGTAAACT
TTCCATCCCCCAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_g22.b1 MSMg01no073_g22.b1 CHROMAT_FILE:
MSMg01no073_g22.b1 PHD_FILE: MSMg01no073_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:29 2005
         (526 letters)



>mm_chr13_60456017_60456942
          Length = 926

 Score =  851 bits (440), Expect = 0.0
 Identities = 497/520 (95%), Gaps = 11/520 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctaccatgtccataaaatggactttgatctctgctttgtactgtacacaaatg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctctaccatgtccataaaatggactttgatctctgctttgtactgtacacaaatg 276

                                                                       
Query: 66  ttaactcagatcgattataaattttgtgaaatataaaagtgcaaaacatctagaagaaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttaactcagatcgattataaattttgtgaaatataaaagtgcaaaacatctagaagaaaa 336

                                                                       
Query: 126 tcttgcaaatttgaatgatataaacatcttatatacagcaactgaagatataatacataa 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 337 tcttgcaaatttgaatgatataaacatcttatatacagcaactgaagatataatacgtaa 396

                                                                       
Query: 186 aataattatctctgtgtctctgtctgtctctccctctgtctgtctgtctgtctgtctctt 245
           ||||||||||||||||||||||||||||||||||||||||||||| |||  || || |  
Sbjct: 397 aataattatctctgtgtctctgtctgtctctccctctgtctgtctctct--ct-tccc-- 451

                                                                       
Query: 246 tctctctctctctctctgtctatctctctggatgtttttatcataaaagctctgtttaag 305
            | | | | |||||| |||||    ||||||||||||||||||||||||||| |||||||
Sbjct: 452 -ccccccc-ctctctttgtct----ctctggatgtttttatcataaaagctccgtttaag 505

                                                                       
Query: 306 cagtgatgcagatctaggaggggtgagaaaaggaaataagatgggagatgacatccagag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagtgatgcagatctaggaggggtgagaaaaggaaataagatgggagatgacatccagag 565

                                                                       
Query: 366 aaggccgttgaatggtcatgttttgaacaagcgatgagcagcaggaagagaaccagaaag 425
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 566 aaggacgttgaatggtcatgttttgaacaagcaatgagcagcaggaagagaaccagagag 625

                                                                       
Query: 426 aaattatgtcacagaaacctgtagcaagggcgctgacatgattgtatggctttgaataag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaattatgtcacagaaacctgtagcaagggcgctgacatgattgtatggctttgaataag 685

                                                   
Query: 486 cttcctttctcaatagcaaaggagcagtaatcctttactg 525
           ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 686 cttcctttctcaataacaaaggagcagtaatcctttactg 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)