BAC Information

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BAC

Clone NameMSMg01-074D02
Chromosome13 (Build37)
Map Location 75,759,808 - 75,760,146
singlet/doubletsinglet
Overlap genenone
Upstream geneArts1, Cast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606
Downstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074D02.T7 (MSMg01no074_d02.b1)MSMg01-074D02.TJ (MSMg01no074_d02.g1)
ACCAG297306AG297307
length694664
length of high quality
(start - end)
344 (50 - 393)575 (55 - 629)
definitionCHROMAT_FILE: MSMg01no074_d02.b1 PHD_FILE: MSMg01no074_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:29 2005CHROMAT_FILE: MSMg01no074_d02.g1 PHD_FILE: MSMg01no074_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCATGTTACCACAGCAGTTTTTGCTTCATATTTAACATAG
CCTACTACTGCAGTTGTGTTGCTAAAGTTACAGGTTACTGCAACATGAAA
AGGTCTTTTTTTCCTTTTTATAGCATATGTTAATTGTATGAAGTAAGGAA
TATCACTGTGACTCTTTCATATAAACATGTAATGCACTTGGATTATATTT
ACCCTCTGTTACTTTTTCTCTACCCCCCTCCCCTCCACTTCACTGCTTCA
TGGTGGAGTAGAGTTTAATTGTGTGTGTGTGTGTGTTTGTGTGCTATACA
TATATATAATTATTTACCACATTTTCTTTATCCATAATTTGTTGTACAAT
CAGGCTTGATCCCATTAATTGATTATGAATACTGCTGCAATAAACATAGG
CACGCGATCTATCCCTGTATTAATCTGATTTTGAATTTTTTACCCATTGC
TACTAATGTTATTTTTCTATGTCATATGAAACTATTCTCCCCCCCTAAAA
CCTTGCGAGAACCCTAACATCCTACTGACACGTTAAATTCCCCCAACCCT
CTACAACCTTACCCCACTTTACACCCCAATACCCAACCCATTATATCATC
CCTTTCCTTGTTTTCCCCCGCTCCAAATCATACCTATAAAATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCCCAGAATAAAATGTTTTCGTTATATGGATGATGTCCTTCTGGCAG
CACCGACAGAGGAAATGCTGGATTTGGCATATAGTAAGACCATACAACAG
CTACAAAAAAGAAGGCTTACAGTAGCCCCTGAAAAGGTGCAGAAGGGCGA
GGTCATCCATTACTTAGGAAGCAAAATAACAGAAAGATATATAACTCCAC
GGAAGATTCAAGTCAGAACTGATCATCTAAGGACTTTAAATGATTTTCAA
AAGTTGTTAGGAGATAGTCAATGGGTTTGGCCTTATCTGGGTCTAACAAA
TAAGCAATTGCAACCTCTTTATGACTTCTTGCCAGGTGTGACAGCCCTGG
ATTCAGAGAGAGTTCTTACAAAAGAAGGAAGGGAAGCCTTAAAGTTAGTA
GAGAAGTTAGTATTCAAATTGCTGCTTTAAAGAGGAGAGAGGTTGATCTT
CCTATATCATTACGTATTTTGCCATCAGAAAATCAACCTACTGGGGCCCT
TTAGCAAGGGGCTCCTTTATTATGGATCCATCCTAAAATTTCCCCCACCA
AAGTGTTATCCTATTATCCTGCCTTGGTTGCCCAATTGGCATTGCTGGGT
TTACAGCAATGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_d02.b1 MSMg01no074_d02.b1 CHROMAT_FILE:
MSMg01no074_d02.b1 PHD_FILE: MSMg01no074_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:29 2005
         (344 letters)



>mm_chr13_75759676_75760420
          Length = 745

 Score =  609 bits (315), Expect = e-179
 Identities = 333/339 (98%), Gaps = 1/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcatgttaccacagcagtttttgcttcatatttaacatagcctactactgca 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 471 ggaattctgcatgttaccacagcagtttttgcttcatatttaacatagtctactactgca 412

                                                                       
Query: 64  gttgtgttgctaaagttacaggttactgcaacatgaaaagg-tctttttttcctttttat 122
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 411 gttgtgttgctaaagttacaggttactgcaacatgaaaaggttttttttttcctttttat 352

                                                                       
Query: 123 agcatatgttaattgtatgaagtaaggaatatcactgtgactctttcatataaacatgta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agcatatgttaattgtatgaagtaaggaatatcactgtgactctttcatataaacatgta 292

                                                                       
Query: 183 atgcacttggattatatttaccctctgttactttttctctacccccctcccctccacttc 242
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 291 atgcacttggattatatttaccctctgttactttttctttacccccctcccctccacttc 232

                                                                       
Query: 243 actgcttcatggtggagtagagtttaattgtgtgtgtgtgtgtgtttgtgtgctatacat 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 231 actgcttcatggtggagtagagtttaattgtgtgtgtgtgtgtgtttgtgtgttatacat 172

                                                  
Query: 303 atatataattatttaccacattttctttatccataattt 341
           ||||||||||||||| |||||||||||||||||||||||
Sbjct: 171 atatataattatttatcacattttctttatccataattt 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)