Query= MSMg01no075_e10.b1 MSMg01no075_e10.b1 CHROMAT_FILE:
MSMg01no075_e10.b1 PHD_FILE: MSMg01no075_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:54 2005
(272 letters)
>mm_chr13_95246682_95247351
Length = 670
Score = 478 bits (247), Expect = e-139
Identities = 262/267 (98%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 5 gaattcattaatgtttcctttgttgatataaacaggcaaaagaatggaccccacttggga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaatgtttcctttgttgatataaacaggcaaaagaatggaccccacttggga 264
Query: 65 aaacaaagaaagaaaaacccatggaagaaattttactcctgaatctggaggaggaggagg 124
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct: 265 aaacaaagaaagaaaaacccat-gaagaaattttact-ctgaatct-gaggaggaggagg 321
Query: 125 acgaggacgaggacgaggacgaggaggaggaagaaaaggaagatgaggatgagaacccct 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acgaggacgaggatgaggacgaggaggaggaagaaaaggaagatgaggatgagaacccct 381
Query: 185 ctgatagcagcagtgacagcggtgggctttataataattgaagtgattgtcacataagat 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgatagcagcagtgacagtggtgggctttataataattgaagtgattgtcacataagat 441
Query: 245 gctccttatcttatcctttgttactaa 271
|||||||||||||||||||||||||||
Sbjct: 442 gctccttatcttatcctttgttactaa 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 670
Length adjustment: 9
Effective length of query: 263
Effective length of database: 661
Effective search space: 173843
Effective search space used: 173843
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no075_e10.g1 MSMg01no075_e10.g1 CHROMAT_FILE:
MSMg01no075_e10.g1 PHD_FILE: MSMg01no075_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:54 2005
(553 letters)
>mm_chr13_95388366_95389317
Length = 952
Score = 1038 bits (537), Expect = 0.0
Identities = 546/549 (99%), Gaps = 1/549 (0%)
Strand = Plus / Minus
Query: 1 catcccgccgaaaagctgtacctgatgtcgggggactgggtgatatttaagatgtcagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 catcccgccgaaaagctgtacctgatgtcgggggactgggtgatatttaagatgtcagaa 689
Query: 61 atacatattggattagtgcgctttgtttccccacaacagcaggtgtttaatcatagctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atacatattggattagtgcgctttgtttccccacaacagcaggtgtttaatcatagctga 629
Query: 121 tggctgaagttaaacgcattaggacagcaacagcccaagaagatggagtttttctaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tggctgaagttaaacgcattaggacagcaacagcccaagaagatggagtttttctaagcc 569
Query: 181 atacaaactccgggataaataactcaaaactaattgtgtgtccacgtcgtagatacattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atacaaactccgggataaataactcaaaactaattgtgtgtccacgtcgtagatacattt 509
Query: 241 ttatttacttaatacattaaacaatgaagatagcctctggcgctcaactccatgtttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttatttacttaatacattaaacaatgaagatagcctctggcgctcaactccatgtttaaa 449
Query: 301 agcttgtacaaatactttatgctagtgaaatgttggctgtttaaacacaattaccatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agcttgtacaaatactttatgctagtgaaatgttggctgtttaaacacaattaccatttc 389
Query: 361 ccttaccggccctccggtggcttcatataagatatttcttaaagcaggaaaaaaaaatct 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 388 ccttaccggccctccggtggcttcatataagatatttcttaaagcagg-aaaaaaaatct 330
Query: 421 cacagcatttctgaggtagaggattttcaggcttgcttttggttgtagtttctgaatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cacagcatttctgaggtagaggattttcaggcttgcttttggttgtagtttctgaatgta 270
Query: 481 attagaataatttttttctgtgttaaatgctcatcttatttacaacaggcaccgtgtgcc 540
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 269 attagaataatttttttctgtgttaaatgctcgtcttatttaaaacaggcaccgtgtgcc 210
Query: 541 tgtcagctg 549
|||||||||
Sbjct: 209 tgtcagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
