BAC Information

Click to search

BAC

Clone NameMSMg01-076J17
Chromosome13 (Build37)
Map Location 21,379,864 - 21,561,889
singlet/doubletdoublet
Overlap geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneOTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076J17.T7 (MSMg01no076_j17.b1)MSMg01-076J17.TJ (MSMg01no076_j17.g1)
ACCAG299142AG299143
length717795
length of high quality
(start - end)
507 (41 - 547)215 (133 - 347)
definitionCHROMAT_FILE: MSMg01no076_j17.b1 PHD_FILE: MSMg01no076_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:38 2005CHROMAT_FILE: MSMg01no076_j17.g1 PHD_FILE: MSMg01no076_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,379,864 - 21,380,361)(21,561,675 - 21,561,889)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGGAGCCGCGGAATTCC
TCTGCATTGCCCCATTTTCCTTTTCTGCATAGTGAATGACTTGAACTAGA
ATGTAATTTCCAAGGTCTAGGGTTCTGAGGACCGCTGGAATTTCAAAAAA
ACACCTTTTGGGGAACAACTTAGAGCTACTAGGATTGTTATCAAAGAAGA
AGAAGAAAAAAGGCTAAGCCACATTTTGTCCATTAATTTTAAAAAGAGCA
CTGTAAGAATAACTTACATGTGGCCCATGACCTTCAAATAAAGGCAAATC
TTAAAATGAGATGGATGGGACTCACGAAGCCCTCCTCACACTTTTCCAGC
AGTTCCTGGAGAGCCATGCATGCAGTTGCAAAGCTCTGAGTTCTCTGTGT
TGTTACTATGTACCCTACCATACAGGTGGCAGAGATTCATCAAAAAGTTC
CTTGGATGAATGAGGGAACGAGTGCCTATGAGCAACGGGTCTAGTAAAAG
CTGCCATTGCACACTGTCTATTCCTCCCAAAGCCAGAGTCCTGTGTACGC
TAACAGACTCATATCTCTATGACATATGAGCTCACATTTCCATGCCGAGC
AAATTTCATTCAGAAAGATTGACCCCCATCCTCTAGGAATGAGCCCTTGT
GTCTGCTTCTACCATAACCTACCTATGGACATTCTTTTACTTCCTAAGGC
ATGGTAAGAAGTCTGCA
TTTTTTTTTTCCTTNNNNCCTTTTCCTTTNNNTTTCTTTTTCCTCTCTCT
ACCCNNNNCCGATGCAGCGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTAGCTCAGAAACTTA
AACTCAAACTTTAGTTCCAGAAGTAATTTAGGTTTTGCTTCCAATAGAGA
GGAACAGGATTGTTTGCTAAGTCGCCAGCAACTGAACCTTTGGCAAGGCA
TACTCTAAGCAGTTACCCAACACTCTTTGATGCAGAATCTCATGATTACT
TGGGTTTTCTTAGTTGCTGGGACTGCAGATCTGCAGCAGCACCAGGCAGC
TGTCAAGTCCCATCGAGGCAGGCAGCTGGAGTAAAGGCAACAGGAATCCT
TCACTAACTCAGCAGAAAAGATGGACACTGCATCGGAAAAGGAATGTTGA
GCCATGCGGTGGTAAACATATGACTCTAATACAAGATCTACTCCAAATCT
ATAGGTACACATGTCTGTGTCCCAGAGTTTTACTCCTCTGCGCATAACTG
ACAGATTCACCCCCTATTACCATAAAACCATCAAATTCATTCCTACTGAT
AGTAAGATGGACTCCTTCTTATGCCTATTCTGTGCAATCATACAGTCCAC
TGGGATGCTTATACTGTGTACTTTCACCATCTATCCCCCTTATTTGCAAT
TCCCCCAGTTGTGTGTGGACATATGCTTTTGCTCCCCTTACACTTGATTA
TCTTGAACACCGGTTCGCCCTTTATTCCCCTAAAGAAATGATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_j17.b1 MSMg01no076_j17.b1 CHROMAT_FILE:
MSMg01no076_j17.b1 PHD_FILE: MSMg01no076_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:38 2005
         (507 letters)



>mm_chr13_21379661_21380567
          Length = 907

 Score =  909 bits (470), Expect = 0.0
 Identities = 491/498 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctctgcattgccccattttccttttctgcatagtgaatgacttgaactagaatg 63
           |||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctctgcacagtctcattttccttttctgcatagtgaatgacttgaactagaatg 263

                                                                       
Query: 64  taatttccaaggtctagggttctgaggaccgctggaatttcaaaaaaacaccttttgggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatttccaaggtctagggttctgaggaccgctggaatttcaaaaaaacaccttttgggg 323

                                                                       
Query: 124 aacaacttagagctactaggattgttatcaaagaagaagaagaaaaaaggctaagccaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacaacttagagctactaggattgttatcaaagaagaagaagaaaaaaggctaagccaca 383

                                                                       
Query: 184 ttttgtccattaattttaaaaagagcactgtaagaataacttacatgtggcccatgacct 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttgtccattaattttaaaaagagaactgtaagaataacttacatgtggcccatgacct 443

                                                                       
Query: 244 tcaaataaaggcaaatcttaaaatgagatggatgggactcacgaagccctcctcacactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaataaaggcaaatcttaaaatgagatggatgggactcacgaagccctcctcacactt 503

                                                                       
Query: 304 ttccagcagttcctggagagccatgcatgcagttgcaaagctctgagttctctgtgttgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttccagcagttcctggagagccatgcatgcagttgcaaagctctgagttctctgtgttgt 563

                                                                       
Query: 364 tactatgtaccctaccatacaggtggcagagattcatcaaaaagttccttggatgaatga 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tactatgtagcctaccatacaggtggcagagattcatcaaaaagttccttggatgaatga 623

                                                                       
Query: 424 gggaacgagtgcctatgagcaacgggtctagtaaaagctgccattgcacactgtctattc 483
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggaacgagtgccaatgagcaacgggtctagtaaaagctgccattgcacactgtctattc 683

                             
Query: 484 ctcccaaagccagagtcc 501
           ||||||||||||||||||
Sbjct: 684 ctcccaaagccagagtcc 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_j17.g1 MSMg01no076_j17.g1 CHROMAT_FILE:
MSMg01no076_j17.g1 PHD_FILE: MSMg01no076_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:39 2005
         (215 letters)



>mm_chr13_21561475_21562089
          Length = 615

 Score =  416 bits (215), Expect = e-121
 Identities = 215/215 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttagctcagaaacttaaactcaaactttagttccagaagtaatttaggttttgcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acttagctcagaaacttaaactcaaactttagttccagaagtaatttaggttttgcttcc 356

                                                                       
Query: 61  aatagagaggaacaggattgtttgctaagtcgccagcaactgaacctttggcaaggcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatagagaggaacaggattgtttgctaagtcgccagcaactgaacctttggcaaggcata 296

                                                                       
Query: 121 ctctaagcagttacccaacactctttgatgcagaatctcatgattacttgggttttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctctaagcagttacccaacactctttgatgcagaatctcatgattacttgggttttctta 236

                                              
Query: 181 gttgctgggactgcagatctgcagcagcaccaggc 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gttgctgggactgcagatctgcagcagcaccaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)