BAC Information

Click to search

BAC

Clone NameMSMg01-078M01
Chromosome13 (Build37)
Map Location 95,817,170 - 95,984,613
singlet/doubletdoublet
Overlap genePde8b
Upstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078M01.T7 (MSMg01no078_m01.b1)MSMg01-078M01.TJ (MSMg01no078_m01.g1)
ACCAG300013AG300014
length719706
length of high quality
(start - end)
172 (45 - 216)478 (76 - 553)
definitionCHROMAT_FILE: MSMg01no078_m01.b1 PHD_FILE: MSMg01no078_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:10 2005CHROMAT_FILE: MSMg01no078_m01.g1 PHD_FILE: MSMg01no078_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,984,450 - 95,984,613)(95,817,170 - 95,817,662)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAAGGTAAGACATGAAAGAATCCTTCCAGGTTAAAGCGATGTTG
GGGTGGGGCTATTGGGGTGGGTACATGATCACAGTGTTATCCTGAGATGG
TTCAGCATGGGATTCTCTGATGTAACCTGTAACCCATAGCCTGGTCTCTG
GTGATGCTCTGTAGGTGATCTGGGGTGACGATGCTACCCCTGGCAAGATG
GTGTGCTGTGTGTTCAAAACCTTTTATATAGGAATAGTAATATTACTGGT
TACAGTTGCCTGTGTGATTCTCAGAGTTGATAAAAGATCCTGTATTCTGG
AAGGAGTTACCGGAAGGCACTAACAGACTTATAATCCATCTACTACTTGA
GTCACTATACCTAACTTATTGTTCATTTTTCATTCTTTTCACCATATACA
CACTAGCCGTGCTTCTCTATTAACTGAGCTCATATGTAATACTCTTTGTT
TTGTTTCTAGGTTTTTTGCTTGTTACATCTTCTACCTTAATTATTGACTA
CTTGACCCTACTTTCTTGGATTATTCTTTATATATTTTTTTTGTCCCATT
GTTTCTGTATCTTTCTTTTGCTTTATTTTCATCTTTAATACATCGTGTTT
GCTGTTCTTCATTCTTTTGCATTTTTTCGCTTCTTCCACTTTGTTTTTGT
AATATCCACCCCATCCATC
CTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACAAGGACATCTGGACTCGACC
AGGCCACATCTATCTAACCTCCTACAAAGGCTTTTGCTACACATAAGACA
CAAATCACCTTATTTCTGGTCCAAGTGGCCAGAATGAATTGAACCAACTT
AGCCCCGCCATAATCACCCCACCCAGCTTCCCTGGCTTCTGTCTCACTTT
GGTGGAACCTCTCTAGACTGGCCTTTGCTGCTCCTGTCCCTGAAGTCTCC
CTCTGACCAATGTGATTCTCAGCTTAAGTTTGGCTTCGAACAGGACTTCC
TCTATAGGGAAAGCTTTCCTGACTACCCTCTCACTCAACCTGCTTCTAGC
CCTTTTCTTATTCTCTCCCAGGGCTTTTGCATGGCTGCCTCCACACACTG
ACTGCATTGTGCAACCACGTGTTTGTTTATTATGTGTTTGCGTATATTCA
GCCTTATTTCTGCTGTCCATAGACTCTAGCTCTAGGTCAGTCTGACACTG
GCCACACAGTGGAGGTCACAGCTGTCACTCACCTTTGTGATGGGAGCCTC
AATGGTCATGGAGTGGATTCTGCCCATGTAGGGGTAGCGCCGATTCTGTA
CGTTTGGTGCCACAGAGAATGCATGACAGTCTTACCTGGTGCTCGTGGTC
TGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_m01.b1 MSMg01no078_m01.b1 CHROMAT_FILE:
MSMg01no078_m01.b1 PHD_FILE: MSMg01no078_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:10 2005
         (172 letters)



>mm_chr13_95984247_95984813
          Length = 567

 Score =  265 bits (137), Expect = 1e-75
 Identities = 159/169 (94%), Gaps = 5/169 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaaaaggtaagacatgaaagaatccttccaggttaaagcgatgttggggtggg 63
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 ggaattccaaaagggaagacatgaaagaatccttccaggttaaagcgatgctggggtggg 308

                                                                       
Query: 64  gctattggggtgggtacatgatcacagtgttatcctgagatggttcagcatgggattctc 123
           ||| ||||||     |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gctcttgggg-----acatgatcacagtgttatcctgagatggttcagcatgggattctc 253

                                                            
Query: 124 tgatgtaacctgtaacccatagcctggtctctggtgatgctctgtaggt 172
           ||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 252 tgatgtaacctgtaacccaaagcctggtctctggtgatgttctgtaggt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 567
Length adjustment: 8
Effective length of query: 164
Effective length of database: 559
Effective search space:    91676
Effective search space used:    91676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no078_m01.g1 MSMg01no078_m01.g1 CHROMAT_FILE:
MSMg01no078_m01.g1 PHD_FILE: MSMg01no078_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:10 2005
         (478 letters)



>mm_chr13_95816970_95817848
          Length = 879

 Score =  756 bits (391), Expect = 0.0
 Identities = 461/493 (93%), Gaps = 15/493 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacaaggacatctggactcgaccaggccacatctatctaacctcctacaaaggctttt 60
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tttacagggacatctggactcgaccaggccacatctacctaacctcctacaaaggctttt 260

                                                                       
Query: 61  gctacacataagacacaaatcaccttatttctggtccaagtggccagaatgaattgaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctacacataagacacaaatcaccttatttctggtccaagtggccagaatgaattgaacc 320

                                                                       
Query: 121 aacttagccccgccataatcaccccacccagcttccctggcttctgtctcactttggtgg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatagccccgccataatcaccccacccagcttccctggcttctgtctcactttggtgg 380

                                                                       
Query: 181 aacctctctagactggcctttgctgctcctgtccctgaagtctccctctgaccaatgtga 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctctctagactggtctttgctgctcctgtccctgaagtctccctctgaccaatgtga 440

                                                                       
Query: 241 ttctcagcttaagtttggcttcgaacaggacttcctctatagggaaagctttcctgacta 300
           ||||||||||||||||||||| ||||| |||||||||| ||  ||||||||||||||| |
Sbjct: 441 ttctcagcttaagtttggctttgaacacgacttcctctctactgaaagctttcctgacca 500

                                                                       
Query: 301 ccctctcactcaacctgcttctagcccttttcttattctctcccagggcttttgcatggc 360
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ccctctcactcagcctgcttctagcccttctcttattctctcccagggcttttgcatggc 560

                                                                       
Query: 361 tgcctccac-acactgactgcattgtgcaaccacgtgtttgtttattatgtgtttgcgta 419
           ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 561 tgcctccaccacactgactgcattgtgtaaccatgtgtttgtttattatgtgtttgggta 620

                                                                       
Query: 420 tattc--------------agccttatttctgctgtccatagactctagctctaggtcag 465
           |||||              ||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 621 tattctgtattccccactcagccttatttctgctgtccgtagactatagctctaggtcag 680

                        
Query: 466 tctgacactggcc 478
           |||||||||||||
Sbjct: 681 tctgacactggcc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space:   406692
Effective search space used:   406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)