Query= MSMg01no078_m01.b1 MSMg01no078_m01.b1 CHROMAT_FILE:
MSMg01no078_m01.b1 PHD_FILE: MSMg01no078_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:10 2005
(172 letters)
>mm_chr13_95984247_95984813
Length = 567
Score = 265 bits (137), Expect = 1e-75
Identities = 159/169 (94%), Gaps = 5/169 (2%)
Strand = Plus / Minus
Query: 4 ggaattccaaaaggtaagacatgaaagaatccttccaggttaaagcgatgttggggtggg 63
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 ggaattccaaaagggaagacatgaaagaatccttccaggttaaagcgatgctggggtggg 308
Query: 64 gctattggggtgggtacatgatcacagtgttatcctgagatggttcagcatgggattctc 123
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gctcttgggg-----acatgatcacagtgttatcctgagatggttcagcatgggattctc 253
Query: 124 tgatgtaacctgtaacccatagcctggtctctggtgatgctctgtaggt 172
||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 252 tgatgtaacctgtaacccaaagcctggtctctggtgatgttctgtaggt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 567
Length adjustment: 8
Effective length of query: 164
Effective length of database: 559
Effective search space: 91676
Effective search space used: 91676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no078_m01.g1 MSMg01no078_m01.g1 CHROMAT_FILE:
MSMg01no078_m01.g1 PHD_FILE: MSMg01no078_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:10 2005
(478 letters)
>mm_chr13_95816970_95817848
Length = 879
Score = 756 bits (391), Expect = 0.0
Identities = 461/493 (93%), Gaps = 15/493 (3%)
Strand = Plus / Plus
Query: 1 tttacaaggacatctggactcgaccaggccacatctatctaacctcctacaaaggctttt 60
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tttacagggacatctggactcgaccaggccacatctacctaacctcctacaaaggctttt 260
Query: 61 gctacacataagacacaaatcaccttatttctggtccaagtggccagaatgaattgaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctacacataagacacaaatcaccttatttctggtccaagtggccagaatgaattgaacc 320
Query: 121 aacttagccccgccataatcaccccacccagcttccctggcttctgtctcactttggtgg 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatagccccgccataatcaccccacccagcttccctggcttctgtctcactttggtgg 380
Query: 181 aacctctctagactggcctttgctgctcctgtccctgaagtctccctctgaccaatgtga 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctctctagactggtctttgctgctcctgtccctgaagtctccctctgaccaatgtga 440
Query: 241 ttctcagcttaagtttggcttcgaacaggacttcctctatagggaaagctttcctgacta 300
||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||| |
Sbjct: 441 ttctcagcttaagtttggctttgaacacgacttcctctctactgaaagctttcctgacca 500
Query: 301 ccctctcactcaacctgcttctagcccttttcttattctctcccagggcttttgcatggc 360
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ccctctcactcagcctgcttctagcccttctcttattctctcccagggcttttgcatggc 560
Query: 361 tgcctccac-acactgactgcattgtgcaaccacgtgtttgtttattatgtgtttgcgta 419
||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 561 tgcctccaccacactgactgcattgtgtaaccatgtgtttgtttattatgtgtttgggta 620
Query: 420 tattc--------------agccttatttctgctgtccatagactctagctctaggtcag 465
||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 621 tattctgtattccccactcagccttatttctgctgtccgtagactatagctctaggtcag 680
Query: 466 tctgacactggcc 478
|||||||||||||
Sbjct: 681 tctgacactggcc 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|