Query= MSMg01no079_o07.b1 MSMg01no079_o07.b1 CHROMAT_FILE:
MSMg01no079_o07.b1 PHD_FILE: MSMg01no079_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:38 2005
(581 letters)
>mm_chr13_46449567_46450547
Length = 981
Score = 890 bits (460), Expect = 0.0
Identities = 575/682 (84%), Gaps = 104/682 (15%)
Strand = Plus / Plus
Query: 4 ggaattccataatcccaaggaataactttctggttgaacaaggtggatggcctggttgtc 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 100 ggaattccataatcccaaggaataacttcctggttgaacaaggtggatggcctggttgtc 159
Query: 64 caatctgcaagtgtttcttggattctgaacttgttgagaggccagcttactgtacacagc 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 160 caatctgcaagtgtttcttggattctgaacttgttgagaggccagctcactgtacacagc 219
Query: 124 tttccatgaactctggatgggaagagagccccagcttcctgaaaggggtagacacaaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tttccatgaactctggatgggaagagagccccagcttcctgaaaggggtagacacaaaga 279
Query: 184 gagtgtgtagactgaaactcaccattttgccacgactacctaaaaatgccagtccttcac 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 280 gagtgtgtagactgaaactcaccattttgccaggactacctaaaaatgccagtccttcac 339
Query: 244 caatctgtaggttcggttctagggtaaagagtaagccttgaggttaagtttcctggtgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caatctgtaggttcggttctagggtaaagagtaagccttgaggttaagtttcctggtgtg 399
Query: 304 tctgtgagtacagcatctttggtgtgtctgtgagtacagcatctttggtgtg-------- 355
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctgtgagtacagcatctttggtgtgtctgtgagtacagcatctttggtgtgtctttgag 459
Query: 355 ------------------------------------------------------------ 355
Sbjct: 460 tatagcatctttggtgtgcatgtgagtacagcatctttggtgtgcatgtgagtacagcat 519
Query: 356 ------------------------------------catccaagccctctcaacacttgt 379
||||||||||||||||||||||||
Sbjct: 520 cattggtgtgcatgtgagtacagcatctttggtgtgcatccaagccctctcaacacttgt 579
Query: 380 agtccattgtcttttctcttatctgcttctcttaattctccatcactgttcactcggttg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agtccattgtcttttctcttatctgcttctcttaattctccatcactgttcactcggttg 639
Query: 440 tcctcgtgggactcagccagcagttttgctatgtacaagaccctaggattagttcagcag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tcctcgtgggactcagccagcagttttgctatgtacaagaccctaggattagttcagcag 699
Query: 500 gaggccacataattggagggtaatcctttgggaaaagaatcagaaccaggggacaaatat 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaggccacataattggagggtaatcctttgggaaaagaatcagaaccaggggacaaatat 759
Query: 560 ttctccttttgttgtaggtaat 581
||||||||||||||||||||||
Sbjct: 760 ttctccttttgttgtaggtaat 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_o07.g1 MSMg01no079_o07.g1 CHROMAT_FILE:
MSMg01no079_o07.g1 PHD_FILE: MSMg01no079_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:38 2005
(463 letters)
>mm_chr13_46624778_46625640
Length = 863
Score = 841 bits (435), Expect = 0.0
Identities = 456/463 (98%)
Strand = Plus / Minus
Query: 1 agaggacagcgaactctgagcaagaaggggtttcagggcaaacccattttcttcctcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agaggacagcgaactctgagcaagaaggggtttcagggcaaacccattttcttcctcctt 604
Query: 61 catttccaagggagaggacggatgggcaggaagagaacgagcatcattctggatcaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 603 catttccaagggagaggacggatgggcaggaagagaacgagcatcattctggatcgatct 544
Query: 121 ctacagggcttgaccagcagccaatgtgctgtgcacgtggagggcgcatccgacacagcc 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 543 ctacagggcttgagcagcagccaatgtgctgtgcacgtggagggcgcatccgacgcagcc 484
Query: 181 gtccaactagcgcactctgttccctaatctgcattttaatttgctaactaaaaacaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtccaactagcgcactctgttccctaatctgcattttaatttgctaactaaaaacaaaca 424
Query: 241 gactaactacaacaaaacaaaacaaacccaaaacctaaaatcttagctttcctcccctaa 300
||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 423 gacaaacaacaacaaaacaaaacaaacccaaaacctaaaaccttagctttcctcccctaa 364
Query: 301 tattaagaaatttgtccttgcagtttttttttaaactcaaaccaaagctcctttctttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tattaagaaatttgtccttgcagtttttttttaaactcaaaccaaagctcctttctttca 304
Query: 361 tcaaatacttcatccctgctcacaaaactgagagagaagacttccttctttttttattcc 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 303 tcaaatacttcatccctgctcacaaaactgagagagaagacttccttctctttttattcc 244
Query: 421 aattatccatttctacagccccaaggaggggtcagagtgtgtt 463
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aattatccatttctacagccccaaggaggggtcagagtgtgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
