BAC Information

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BAC

Clone NameMSMg01-080F08
Chromosome13 (Build37)
Map Location 105,647,671 - 105,648,237
singlet/doubletsinglet
Overlap geneA930021C24Rik
Upstream geneErbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik
Downstream geneEG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F08.T7 (MSMg01no080_f08.b1)MSMg01-080F08.TJ (MSMg01no080_f08.g1)
ACCAG301202AG301203
length703699
length of high quality
(start - end)		574 (40 - 613)504 (69 - 572)
definitionCHROMAT_FILE: MSMg01no080_f08.b1 PHD_FILE: MSMg01no080_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:12 2005CHROMAT_FILE: MSMg01no080_f08.g1 PHD_FILE: MSMg01no080_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CATTGAATCAGTTTTTTTCTTTAAGTGACAGGATATTTTCGGGAAATAGT
GTTCAATGGAAACTAGCAGAGTATAAATGCCCTCAGGGACAGAGAGTCAG
TGGGCCAGAAAATCTGATTTCATATATGTAATTCCGGTTTACTTATCAAT
ACTTAATCCTCTTGTAACATGAAAGTTTGATGTTCTTGTGGAACCAAGGA
AGTCAAATACACAAAACAACAAAACTCCCAACAGGATGCTCTTGGTATTT
TATTCTGGACTGGTCAGTCAATTGTCCAACTGGCACCTAGTATGAAGAAT
CAAGGGGGAATCTAAAAGAATTCAGAGGTGCTCAAAAAAAAATCTGAAAA
ACTAATCTGCTGTTGAGTAGCCTATAAACCAATTAATGCTATTGGTGTAT
GTATATGTGTACAGTGTAACTATAAAGTAGAAAGACATTTTTAGGCATAA
TTTATACAGAGATTCCTCTGTGTCTCCTTATTGCCTCATTTATAAAGTAG
TATACAGATATAGTTATTGTCATTATAAACTATCAAAATTTTGTGGAAGC
TGATTTCCATTAGGGTATTAGGAAACACTAATCTTAAATGCTGATGTGCG
TATTCAGAATATATATTACAGAACATGTATGTATATATATATATACCCTC
TCN

AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGAAAGTT
TGGCTGGGTATAGTAGCCTGGGCTGGCATTTGTGTTCTCTTAGTGTCTGT
ACACCATCTGTCCAGTATCTTCTGGCTTTCATAGTCTTTGGTGAAAAATC
TGGTGTAATTCTGATAGGCCTGCCTTTATATGTTACTTGACTTTTTTCCC
TTACTGTTTTTAATATTCTCTCTTTAGTGCATTTGTTGTTCTGATTATTA
TGTGTTGGTAGGAATTCTTTTCTGGTCCAGTCTATTTGGAATTCTGTAGG
CTTCTTGTATTTCGAGATGGGCATCTCTTTCTTTAGGTTTGGGAAGTTTT
CTTCTATAATTTTGTTGAAGATATTTGCTGGCCCTTTAAGTTGAAAAATC
TTCCTTCTCATCTACTCCTATTATCCGTAGGTTTGGTCTTCTCATTGTGT
CCTGCATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTGCATTG
TCTTTGATTGTTGTGCTGATGTTCTCTATGGAATCTTCTGTACCTGAAAT
TCTCTCTTCCATCTCTTATATTCTGTTGCTGATGCTTCGAGTCTATGGTT
CCAGATTTCTTTCTTAGGGAATCTATCTCCAGCGTAGTCTTCACTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f08.b1 MSMg01no080_f08.b1 CHROMAT_FILE:
MSMg01no080_f08.b1 PHD_FILE: MSMg01no080_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:12 2005
         (574 letters)



>mm_chr13_105647671_105648644
          Length = 974

 Score = 1007 bits (521), Expect = 0.0
 Identities = 551/567 (97%), Gaps = 10/567 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacattgaatcagtttttttctttaagtgacaggatattttcgggaaatagtgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaattcacattgaatcagtttttttctttaagtgacaggatattttcgggaaatagtgtt 508

                                                                       
Query: 65  caatggaaactagcagagtataaatgccctcagggacagagagtcagtgggccagaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caatggaaactagcagagtataaatgccctcagggacagagagtcagtgggccagaaaat 448

                                                                       
Query: 125 ctgatttcatatatgtaattccggtttacttatcaatacttaatcctcttgtaacatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgatttcatatatgtaattccggtttacttatcaatacttaatcctcttgtaacatgaa 388

                                                                       
Query: 185 agtttgatgttcttgtggaaccaaggaagtcaaatacacaaaacaacaaaactcccaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 387 agtttgatgttcttgtggaaccaaggaagtcaaatacacaaaacaacaaaactcctaaca 328

                                                                       
Query: 245 ggatgctcttggtattttattctggactggtcagtcaattgtccaactggcacctagtat 304
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 327 ggatgctcttggtatcttattctggactggtcagtcaattgtccaactggcacctagtgt 268

                                                                       
Query: 305 gaagaatcaagggggaatctaaaagaattcagaggtgctcaaaaaaaaatctgaaaaact 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 267 gaagaatcaagggggaatctaaaagaattcaggggtgctcaaaaaaaaatctgaaaaact 208

                                                                       
Query: 365 aa----------tctgctgttgagtagcctataaaccaattaatgctattggtgtatgta 414
           ||          |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 207 aatagaatgttctctgctgttgagtagcctataaactagttaatgctattggtgtatgta 148

                                                                       
Query: 415 tatgtgtacagtgtaactataaagtagaaagacatttttaggcataatttatacagagat 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tatgtgtacagtgtaactataaagtagaaagacatttttaggcataatttatacagagat 88

                                                                       
Query: 475 tcctctgtgtctccttattgcctcatttataaagtagtatacagatatagttattgtcat 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  tcctctgtgtctccttattgcctcatttataaagtagtatacagatatagttattgtcat 28

                                      
Query: 535 tataaactatcaaaattttgtggaagc 561
           |||||||||||||||||||||||||||
Sbjct: 27  tataaactatcaaaattttgtggaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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