BAC Information

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BAC

Clone NameMSMg01-080J20
Chromosome13 (Build37)
Map Location 96,074,102 - 96,074,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080J20.T7 (MSMg01no080_j20.b1)MSMg01-080J20.TJ (MSMg01no080_j20.g1)
ACCAG301409AG301410
length731738
length of high quality
(start - end)
94 (69 - 162)236 (67 - 302)
definitionCHROMAT_FILE: MSMg01no080_j20.b1 PHD_FILE: MSMg01no080_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:35 2005CHROMAT_FILE: MSMg01no080_j20.g1 PHD_FILE: MSMg01no080_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCCTATTCCAAACGGAGGCGCGGAATTCTCAGA
ATTGCTGACACAGAGGGGACAAGATGATAAGATGAAGTCATTTTATGGGA
AAGGACCTTTTTCTTCCCTCCTTCCCTTCCCTCCCTCCCTTTTCTGCTTT
CCCTCCCTCTAACGTCCGTCGCGCCCTCGACGGTTCGGGAAGCACGTGAG
TCTTGGCACACATCAGAGTCCTACTTGGCTCAGTCAAGACATATGTACTC
GTTAATGTCGCCCTTCCCGAGCCCACTCTTATTTATAGATGGTATCCACG
GTGACCATTTTTTTTTTAAGCACAGAAGACATATTCTGCCTCTCATTACT
GATTTGTACGCCCCCCCCCCCATGTCTAGAATTAGATGTTGTTTGAGAGG
AGGTGGCCCCCCTCGCGCGTTCGCACGCTTTGCGCTTCTTGGTTTACGTG
CCCCCTTTATATGCCCCGTTCCTGATTGCCCGTCCCGCCGCGCCACCTCG
TGTTTTATTTCGCCTTTGATTCCTGACTTTTACTATTCAGCTTTATCCTC
GTGACTTCCCCCTGTTTAACTGTGCCTTGTGTTCCACACCTTCCTTACCT
TTTTACCACCTATTTTCCACCCTTTTTCCCCTTCCCCGTTGCTCTTTTTT
TTTTTAACCGACCCTTCCCCCCCTTTCGTTTTTTTTCTCCTCCCCCTTTA
CCTTTTTTCCTTACCCCCCCCTCCCTTTTTC
CGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATTTGCTTATAAAGAAAATAAAATCATAAAATT
TGAAAGAAGATGGGTTGAACTGGAAAATGTCACTAAGTGACTAAGTGAGG
TAGCCCAGGCCCAGAAAGATGTTTAAACTCCACATGTCCTTCCACACAGG
CAGCCTTGATCATTGACATTTTAGAGTATTGTGTTTAGTTTTGAGTTCTG
GTAAGGCCAGAAAAGATGACAAGGGCCATTTGGAGGAGTGGCGCATGAAA
ATAAACCTTATTTTATGGGGTATTTGTAGAAGACATTTGGCAGGAGAGTA
TAGTATGACCCGCCTGGGAGCTAGGAGGCTCTGAGCTTTTATGTTTGTCT
ACCCCCCCCATATGAGTTTATTGTTTGCGCTCACCCCCCCCCTTGCTCCT
TTGCCCCCCTTTCCCCCTACAATGCCTTCGTATATCCCCTGACGCTCGCC
TTTTTCCCCCCCCTCTTTCTTTTTTTTTCCCCCTCCCCTTTGTCACCCAA
ACCGCCCTCCTCTAATTCCATCCTAATATTCCCTCATCTTCTACCCCCCC
AGTTCCCCTCGCTATTCCACATAATTCCCCCTTTTTTATTCTCTTTCCCT
TCTTCTCTTCTCCCTCCCCTCATATCCACCTCCCCCGCCCACCTCTTTTC
TCCCTACTAATTGCCTTATACTGTATGTTTTTTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_j20.g1 MSMg01no080_j20.g1 CHROMAT_FILE:
MSMg01no080_j20.g1 PHD_FILE: MSMg01no080_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:35 2005
         (236 letters)



>mm_chr13_96073902_96074537
          Length = 636

 Score =  416 bits (215), Expect = e-121
 Identities = 230/235 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttgcttataaagaaaataaaatcataaaatttgaaagaagatgggttgaactggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttgcttataaagaaaataaaatcataaaatttgaaagaagatgggttgaactggaaa 260

                                                                       
Query: 61  atgtcactaagtgactaagtgaggtagcccaggcccagaaagatgtttaaactccacatg 120
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 atggcactaagtgactaagtgaggtagcccaggcccagaaagatgtttaaacaccacatg 320

                                                                       
Query: 121 tccttccacacaggcagccttgatcattgacattttagagtattgtgtttagttttgagt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttccacacaggcagccttgagcattgacattttagagtattgtgtttagttttgagt 380

                                                                  
Query: 181 tctggtaaggccagaaaagatgacaagggccatttggaggagtggcgcatgaaaa 235
           ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 381 tctggtaaggccagaaaagatgagaagggccatttggaggagtggggcatgaaaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)