Query= MSMg01no080_m06.b1 MSMg01no080_m06.b1 CHROMAT_FILE:
MSMg01no080_m06.b1 PHD_FILE: MSMg01no080_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:46 2005
(371 letters)
>mm_chr13_21207042_21207812
Length = 771
Score = 687 bits (355), Expect = 0.0
Identities = 364/367 (99%)
Strand = Plus / Plus
Query: 5 gaattccagatcctgacataagactcaactcttcaaggtcacatagaaaaaaagaatgtc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatcctgagataagactcaactcttcaaggtcacatagaaaaaaagaatgtc 264
Query: 65 tagaattaaactcatttgatatcaaagaattttcaacagggtacaagagaagttgactat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagaattaaactcatttgatatcaaagaattttcaacagggtacaagagaagttgactat 324
Query: 125 aataggcaacttgtatacattaattctttcaattattaacctaacttcttccactgcagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataggcaacttgtatacattaattctttcaattattaacctaacttcttccactgcagc 384
Query: 185 taattctgtatcttaccagttacttccataggctaactaacaatttatttcttgttctcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taattctgtatcttaccagttacttccataggctaactaacaatttatttcttgttctcc 444
Query: 245 ttgtcaccctgcccactactttccctctatctccctctcttactcttcttactgtagatt 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtcaccctgcctactactttccctctatctccctctcttactcttcttactgtagatt 504
Query: 305 ataaagactgaaagactatggaccccagcaattacagtactttgcatgtttttatcctgc 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaagactgaaagactatggacccaagcaattacagtactttgcatgtttttatcctgc 564
Query: 365 ttggatt 371
|||||||
Sbjct: 565 ttggatt 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_m06.g1 MSMg01no080_m06.g1 CHROMAT_FILE:
MSMg01no080_m06.g1 PHD_FILE: MSMg01no080_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:46 2005
(388 letters)
>mm_chr13_21350939_21351728
Length = 790
Score = 615 bits (318), Expect = e-180
Identities = 356/372 (95%), Gaps = 8/372 (2%)
Strand = Plus / Minus
Query: 20 ccttccccacccctcatcaaaaacctggagatgctggggatcgaacccaggacctcatgc 79
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 790 ccttcccca-----catcaaaagcctggagatgctggggatcgaacccaggacctcatgc 736
Query: 80 atgctaagcatgcgctctaccactgagctacatccccaccacttggaatttagtgtttcc 139
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 735 atgctaagcatgcgctctaccactgagctacatccccaccacttgaaatctagtgtttcc 676
Query: 140 tactcatctttataaaattcctagacttggtacttttattcgtcaaaaaaaa-ttttttt 198
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 675 tactcatctttataaaattcctagacttggtacttttattcgtcaaaaaaaatttttttt 616
Query: 199 taattaaaaaaaaaaaaaaaaaagggcggtcttgtaagaagggtattctgaccaacctgc 258
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 615 taatttaaaaaaaaaaaaaaaaagagcggtcttgtaagaagggtattctgaccaacctgc 556
Query: 259 actttcatcatagacaataaggg--atatgaagagtctagggttggagacctcagtttaa 316
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 555 actttcatcatagacaataagggatatataaagagtctagggttggagacctcagtttaa 496
Query: 317 aagtgtgcgggatcctcttttctttttacaggaccaaggagagatcctttcaggaaagat 376
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 495 aagtgtgcgggatcctcttttctttctacaggaccaaggagagatccttccaggaaagat 436
Query: 377 gaggaaccgttt 388
||||||||||||
Sbjct: 435 gaggaaccgttt 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 790
Length adjustment: 9
Effective length of query: 379
Effective length of database: 781
Effective search space: 295999
Effective search space used: 295999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
