BAC Information

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BAC

Clone NameMSMg01-081F05
Chromosome13 (Build37)
Map Location 107,989,859 - 108,100,891
singlet/doubletdoublet
Overlap geneLOC100040350
Upstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
Downstream geneLOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081F05.T7 (MSMg01no081_f05.b1)MSMg01-081F05.TJ (MSMg01no081_f05.g1)
ACCAG301954AG301955
length740766
length of high quality
(start - end)		326 (42 - 367)191 (72 - 262)
definitionCHROMAT_FILE: MSMg01no081_f05.b1 PHD_FILE: MSMg01no081_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:29 2005CHROMAT_FILE: MSMg01no081_f05.g1 PHD_FILE: MSMg01no081_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,100,570 - 108,100,891)(107,989,859 - 107,990,042)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGAGGTGACCAATTGTATGGTAACTTGTTCAATAACAATACATAGAT
GAAAATTACTACATTGCTTAGTATAAAATGAGTTGGATGATTGTGACATG
AACTCCAGTTAGGGTGCTAGCTACAAACACAACTGGAGTTCTGATATTTA
GTCCTGTTTGAGTGAATTGCTTAAAACACTTGAATTCTTATTTGTATATT
GTTTTGGAAATATGCACTCAATGAGTCCAGAAAGCTGCAATATCAAGAAA
GCAAGATTAACTCCATTATAATAATTACTGCAGTACCCTACAATTGTGTG
AGAATGTAATATGCCATTGTCACTGGATTTGAAGAACGTAACAGATTACC
ATCCATTCTTAGTTGGTGAGTCTGCATGTCTGCTTAGTATAGATAGCATG
CTTTCTCCTTCTCACTCTATGGTTCTCGTGCCTCTCTGAGCTCTTGTGAG
TCCTCTCTTTTTTTCTCCTCTTTTCTATGAGCCTTATCTTCTTTAGCCTT
TCATGTTTCCTATCCCACCCTTCCATCCCCTTCTTGTTTGTTCTTCTTAT
TTTTTTCTCTTTCTGCCGAATACAATATCTCCTATTGTATAATTACAATA
GCACTTGTTCATTTCCTCATTCTTCCCCAGATTCAGTTCACTTAAAATAC
AGAAAATGCAACAACTAAATTATCTTCCAATTACTTAAAT

TACTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTAAGATAGTCACAGGTAAAGAAATTCT
GAAGACACTTCTTGGAGAATGGCTTCTTTTGCCTTCTACATGGTGGTAAC
ATTGTGTTTGTTAGTGATGCTATTGTCCTTGTCTGGTGAATATGCCAACT
CTCTTCTTCATTTGACAATACAGATGTTGGCCTTGCTTACCTTAAGGCTT
CTATTGCTGCTACATAACACCATGACCAGAAAGCAAGCTGGTGAGGCTAG
GGCTTATTTAGCTTTCACTTCCACATTGAAGTTTATCCCTGTAAGAAGTC
AAGTATGGTTCTCTCACCTAACTTGCTATCTGTTATTCACTAATCTGATG
TCCAGCCTGTGATAGTTCGTTTGCTTACCTGTCCAGCCTTCTATCAAAAC
AATATAAAATCATAATAACTTTTTTTAATCAATAAACCACAATTTTTTGT
TACTTTTTCATTTTTCCCTTTTATTCTACTTTCTTTCCTCATCTATTTTA
ATTTATATATCTTTCCCTTCTTTCCTCCTTACTCCTCATATCTTTCCACT
ATTTTCTATATAGCTTTTTATATTTCCCCCCTCTTTTCTTTCTTCTCTTT
CTTTTTTTATTCTTTTATTCCCTTTTATTTCCCCCATCTCCTCAATTTTA
CAATTTTTCCACAAACCATCCCCAACCTCATTCTTCTTTCTCTTCAAACT
TATCATTCCTACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_f05.b1 MSMg01no081_f05.b1 CHROMAT_FILE:
MSMg01no081_f05.b1 PHD_FILE: MSMg01no081_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:29 2005
         (326 letters)



>mm_chr13_108100366_108101091
          Length = 726

 Score =  584 bits (302), Expect = e-171
 Identities = 317/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgaggtgaccaattgtatggtaacttgttcaataacaatacatagatgaaaa 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcattgaggtgataaattgtatggtaacttgttcaataacaatacatagatgaaaa 467

                                                                       
Query: 65  ttactacattgcttagtataaaatgagttggatgattgtgacatgaactccagttagggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttactacattgcttagtataaaatgagttggatgattgtgacatgaactccagttagggt 407

                                                                       
Query: 125 gctagctacaaacacaactggagttctgatatttagtcctgtttgagtgaattgcttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gctagctacaaacacaactggagttctgatatttagtcctgtttgagtgaattgcttaaa 347

                                                                       
Query: 185 acacttgaattcttatttgtatattgttttggaaatatgcactcaatgagtccagaaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 346 acacttgaattcttatttgtatattgttttggaaatatgcactcaatgagtccagaaggc 287

                                                                       
Query: 245 tgcaatatcaagaaagcaagattaactccattataataattactgcagtaccctacaatt 304
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 286 tgcaatatcaagaaagcaagattatctccattaaaataattactgcagtaccctacaatt 227

                                 
Query: 305 gtgtgagaatgtaatatgccat 326
           ||||||||||||||||||||||
Sbjct: 226 gtgtgagaatgtaatatgccat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no081_f05.g1 MSMg01no081_f05.g1 CHROMAT_FILE:
MSMg01no081_f05.g1 PHD_FILE: MSMg01no081_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:29 2005
         (191 letters)



>mm_chr13_107989659_107990248
          Length = 590

 Score =  335 bits (173), Expect = 1e-96
 Identities = 182/185 (98%), Gaps = 1/185 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaagatagtcacaggtaaagaaattctgaagacacttcttggagaatggcttcttttg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cttaagatagtcacaggtaaagaaattctgaagactcttcttggagaatggcttcttttg 260

                                                                       
Query: 61  ccttctacatggtggtaacattgtgtttgttagtgatgctattgtccttgtctggtgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttctacatggtggtaacattgtgtttgttagtgatgctattgtccttgtctggtgaat 320

                                                                       
Query: 121 atgccaactctcttcttcatttgacaatacagatgttggccttgcttaccttaaggcttc 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 321 atgccaactctcttcttcatttgacaatacagatgttggc-ttgcttaccttaaggtttc 379

                
Query: 181 tattg 185
           |||||
Sbjct: 380 tattg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 590
Length adjustment: 8
Effective length of query: 183
Effective length of database: 582
Effective search space:   106506
Effective search space used:   106506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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